PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610327.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 723aa MW: 81446.5 Da PI: 7.1524 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9.2e-19 | 24 | 79 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++++++q+++Le++F+++++p+ ++r +L ++l+L+ +q+k+WFqN+R++ k XP_013610327.1 24 KKNYHRHSNHQIQRLEAYFKECHHPDDSQRLKLGEELKLEPKQIKFWFQNKRTQAK 79 688899***********************************************988 PP | |||||||
2 | START | 134.9 | 8.9e-43 | 240 | 460 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 + +a++e++++++ ee +W +ss +++n++++ ++++ k+ +++e +++++v +m++ +lv+ lld+ +W + + +a+t+ v XP_013610327.1 240 MVTAMTEVITLIQTEESMWIQSSidgrlviDQKNYEKTFTNPSHFKSpsSRIESSKEVAVIPMDAKNLVNMLLDTE-KWANLFStivsEAKTIHV 333 6799**************************************7766699***************************.88888877777******* PP ECTT....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS START 85 issg....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtwvehvdl 172 ++s ++ lm+ +l lspl p R+f+++R+++ql++++wvi+dvS + ++ e ++ +v+ +pSg+li+ ++nghskvtw+ehv++ XP_013610327.1 334 LESMdprrNFSKLMYEQLHILSPLLPpREFMILRCCQQLEEDVWVIADVSYHQVAFEFEfeTPACVK---RPSGCLIQALPNGHSKVTWMEHVEV 425 *998899*999*************999*****************************99766666666...************************* PP -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ++++ h ++r l+ g ga++w+atl+r ce+ XP_013610327.1 426 NDKVRaHRIYRDLLCGGFGYGARRWTATLERMCER 460 ****99***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.89E-17 | 8 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 21 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.823 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-17 | 23 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.05E-15 | 24 | 82 | No hit | No description |
Pfam | PF00046 | 3.0E-16 | 24 | 79 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 39.452 | 229 | 463 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.92E-27 | 231 | 461 | No hit | No description |
CDD | cd08875 | 1.05E-91 | 233 | 459 | No hit | No description |
SMART | SM00234 | 4.1E-29 | 238 | 460 | IPR002913 | START domain |
Pfam | PF01852 | 3.7E-36 | 240 | 460 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.4E-7 | 243 | 425 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.06E-5 | 484 | 687 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 723 aa Download sequence Send to blast |
MASSRDSSSS DEQETSFNTS DGDKKNYHRH SNHQIQRLEA YFKECHHPDD SQRLKLGEEL 60 KLEPKQIKFW FQNKRTQAKT QSEKADNASL RTENMKIRRE NEALQEALNT VTCPPCGGPR 120 PGKGERALYL QNLRTHNTYL REERDRLSSL VNKSEGHSRP SFNALAYHHG PSLYASASNN 180 PHVTYGSSSN YRVEPSSLVR EPYSRERINI GQPPQPRNPI QLQRFQPLSQ MEKVTMTEAM 240 VTAMTEVITL IQTEESMWIQ SSIDGRLVID QKNYEKTFTN PSHFKSPSSR IESSKEVAVI 300 PMDAKNLVNM LLDTEKWANL FSTIVSEAKT IHVLESMDPR RNFSKLMYEQ LHILSPLLPP 360 REFMILRCCQ QLEEDVWVIA DVSYHQVAFE FEFETPACVK RPSGCLIQAL PNGHSKVTWM 420 EHVEVNDKVR AHRIYRDLLC GGFGYGARRW TATLERMCER LSLYSVSGLP TTDFPGVVDT 480 MDGRKRVMDL GERMSKNFAW ILKMPEKSGF SQQTATNSSG VRISVRVNEE VGQPAGLIVC 540 AGLSLCLPLA PLQVYNFLKN LEVRHQWDVL CQASPVTEVA RFVTGADNKN CVNILKPSSA 600 TENGALMIIQ DSFIDALGGM VVYAPVDLRT AHAAFLGNVD PSSIPILPSG FVISRDGRPP 660 SAAELDGGLD NCKTLLTVAF QILVTGPTMF EEDQMNEWTT KVHTLLSSTI RRVKGMLNCD 720 DGQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in anthers with highest levels in the tapetum and pollen grains, and chalazal end of the embryo sac. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610327.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610327.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG10 | ||||
Swissprot | Q9FFI0 | 0.0 | HDG9_ARATH; Homeobox-leucine zipper protein HDG9 | ||||
TrEMBL | A0A0D3EET9 | 0.0 | A0A0D3EET9_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g161400.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8468 | 15 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34650.1 | 0.0 | homeodomain GLABROUS 10 |
Publications ? help Back to Top | |||
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