PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610265.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 253aa    MW: 28357.7 Da    PI: 6.2445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.5e-2083132255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a++k++g
  XP_013610265.1  83 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAALAYDEAALKFKG 132
                     7********.**********93....36************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-3382141IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2283141IPR016177DNA-binding domain
SMARTSM003804.7E-3783146IPR001471AP2/ERF domain
PfamPF008476.0E-1483132IPR001471AP2/ERF domain
PROSITE profilePS5103224.94883140IPR001471AP2/ERF domain
CDDcd000181.81E-2083141No hitNo description
PRINTSPR003671.6E-118495IPR001471AP2/ERF domain
PRINTSPR003671.6E-11106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MMPFGAGESD ERKEADDEEN IFPFLSARSQ YDTRAMVSAL TQVIGNQSST HDSNQQPPVE  60
YNQQDPIQHV PPTQDQGNLR KRHYRGVRQR PWGKWAAEIR DPQKAARVWL GTFETAEAAA  120
LAYDEAALKF KGSKAKLNFP ERAQLASNTS TITGLPNYHS SNNQMYYSNP QTNPQTMPYY  180
NQYYYNQYLQ QGGNSNDALS YSLAGGETGG SMYNHQSISN TTSSSSGGSS RQQQEQDYAR  240
FWHFGDSSPS SGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2682142162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Restricted to dividing quiescent center cells. {ECO:0000269|PubMed:24158907}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator of the phytosulfokine PSK5 peptide hormone. Binds to the GCC-box pathogenesis-related promoter element. Rate-limiting factor of quiescent center cell division active when surrounding stem cells are damaged. Is a proteolytic target of APC/C-FZR1 complex. {ECO:0000269|PubMed:24158907}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610265.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by brassinosteroid, but not regulated by ethylene. {ECO:0000269|PubMed:24158907}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891950.0AC189195.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB004B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610265.10.0PREDICTED: ethylene-responsive transcription factor ERF115
RefseqXP_013746783.10.0ethylene-responsive transcription factor ERF115
SwissprotQ9LY291e-130EF115_ARATH; Ethylene-responsive transcription factor ERF115
TrEMBLA0A0D3EH440.0A0A0D3EH44_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E4M70.0A0A3P6E4M7_BRAOL; Uncharacterized protein
STRINGBo9g175390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52921851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.11e-115ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang Y, et al.
    Shade avoidance 6 encodes an Arabidopsis flap endonuclease required for maintenance of genome integrity and development.
    Nucleic Acids Res., 2016. 44(3): p. 1271-84
    [PMID:26721386]
  4. Zhang Y, et al.
    TOPOISOMERASE1α Acts through Two Distinct Mechanisms to Regulate Stele and Columella Stem Cell Maintenance.
    Plant Physiol., 2016. 171(1): p. 483-93
    [PMID:26969721]
  5. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]
  6. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]