PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610265.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 28357.7 Da PI: 6.2445 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.5e-20 | 83 | 132 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa a+++a++k++g XP_013610265.1 83 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAALAYDEAALKFKG 132 7********.**********93....36************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.8E-33 | 82 | 141 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 83 | 141 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.7E-37 | 83 | 146 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-14 | 83 | 132 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.948 | 83 | 140 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.81E-20 | 83 | 141 | No hit | No description |
PRINTS | PR00367 | 1.6E-11 | 84 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 106 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MMPFGAGESD ERKEADDEEN IFPFLSARSQ YDTRAMVSAL TQVIGNQSST HDSNQQPPVE 60 YNQQDPIQHV PPTQDQGNLR KRHYRGVRQR PWGKWAAEIR DPQKAARVWL GTFETAEAAA 120 LAYDEAALKF KGSKAKLNFP ERAQLASNTS TITGLPNYHS SNNQMYYSNP QTNPQTMPYY 180 NQYYYNQYLQ QGGNSNDALS YSLAGGETGG SMYNHQSISN TTSSSSGGSS RQQQEQDYAR 240 FWHFGDSSPS SGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-26 | 82 | 142 | 1 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to dividing quiescent center cells. {ECO:0000269|PubMed:24158907}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator of the phytosulfokine PSK5 peptide hormone. Binds to the GCC-box pathogenesis-related promoter element. Rate-limiting factor of quiescent center cell division active when surrounding stem cells are damaged. Is a proteolytic target of APC/C-FZR1 complex. {ECO:0000269|PubMed:24158907}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610265.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by brassinosteroid, but not regulated by ethylene. {ECO:0000269|PubMed:24158907}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189195 | 0.0 | AC189195.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB004B12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610265.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF115 | ||||
Refseq | XP_013746783.1 | 0.0 | ethylene-responsive transcription factor ERF115 | ||||
Swissprot | Q9LY29 | 1e-130 | EF115_ARATH; Ethylene-responsive transcription factor ERF115 | ||||
TrEMBL | A0A0D3EH44 | 0.0 | A0A0D3EH44_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6E4M7 | 0.0 | A0A3P6E4M7_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g175390.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5292 | 18 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07310.1 | 1e-115 | ERF family protein |