PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610242.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 331aa MW: 37991 Da PI: 7.2606 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 3.9e-05 | 236 | 259 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+Cp+C+ +F ++ + Hi++ H XP_013610242.1 236 YTCPKCKNVFDTSQKFAAHISSvH 259 9*******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.245 | 236 | 264 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 238 | 259 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MYSIPNGLNS YGDNTMNLHG SVPTQMNSSF GDPETKMFQS MFTTSVITNH HGLFSSSHAS 60 NCYRDSSSFG FNNSHAAYQM RTNMVSDVVD YFPINHNPQV SQISITQTIT RRYSVIVPTR 120 SLITAQNEYE RAMDPNISYP SFYPQTFVDN QRTYPQSFVD NQSNILNPTP LSTIYPRNVN 180 QFSFSSKQHH DQHVPHHQPV IKRRKFDEIF DGFDFEENGV YDGRTHSLPY EKYGPYTCPK 240 CKNVFDTSQK FAAHISSVHY KNETVEEKAK RYSARNKRRF RKIDQTMHGE SQMIQPEERV 300 VEASGGNNNI ASGIEASQQQ LVVKEEPTYE P |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00523 | DAP | Transfer from AT5G22990 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610242.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610242.1 | 0.0 | PREDICTED: uncharacterized protein LOC106316926 | ||||
TrEMBL | A0A078GNU0 | 0.0 | A0A078GNU0_BRANA; BnaC09g36070D protein | ||||
TrEMBL | A0A0D3ED96 | 0.0 | A0A0D3ED96_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EKJ5 | 0.0 | A0A3P6EKJ5_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g147060.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1924 | 19 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22990.1 | 1e-107 | C2H2-like zinc finger protein |