PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013610231.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 956aa MW: 107339 Da PI: 7.2697

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013610231.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.2	4.1e-08	177	230	22	75
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 +rgk ++ + +ev++++ + g++r +k kw+n+ ++++k++e+ek++ e+ XP_013610231.1 177 GRGKTRAEKDREVAEFLNRNGVNRDSKIAGTKWDNMLGEFRKVNEWEKGGDREK 230 2457999999**************************************985444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.6E-6	145	228	No hit	No description
CDD	cd00180	1.04E-9	802	945	No hit	No description
Gene3D	G3DSA:1.10.510.10	3.1E-6	804	908	No hit	No description
SuperFamily	SSF56112	1.76E-13	805	945	IPR011009	Protein kinase-like domain

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence Send to blast
MGETTKGDAT KPSPNQISSP KDSSLDHQTP TPSPIHHHHQ SFHPSPIFIA TVSSPGAPII 60 PKRPRFISSS GLSPPQWKAL PSPSTLPTAA TFPSLPSPST TVVAASSTET AASSPLEQEG 120 INTEKQQLET DSFQHKFRKG KYVSPVWKPH EMLWLAKAWR VQYQKQETGP GSGSGEGRGK 180 TRAEKDREVA EFLNRNGVNR DSKIAGTKWD NMLGEFRKVN EWEKGGDREK YGKSYFRLSP 240 YERKQHRLPA SFDEEVYQEL ALFMGPRARA LSIKRCIGGA PADVTLTPPS VETLPPILHP 300 PFMTSRDDDV DNNRITSIGR GKRLALSIAG DDHPQYPYTH NIGRGSGLFS NRSYFNPSFE 360 TIPSSSSSLK DLRRIGKIRL TWEESVNLWA EEGEVDYGRI RVSGSSFLNA DELTYLDDSI 420 VACTMESFDD GPLRGFSLDK FISGQHLKVF GRQKSTSSSA PSPSVNMANS IGRAQLPLAV 480 PINKSISTLE FQDPSEHYLS SLRVPAANPP SLFELGRYIQ EPPPENLRFP IRRDVYKDLP 540 PGKELFFSTS TTELLDCRAI TYDIISPVMF RLSPNSVISS KDSLIPLWDD CVNRMVSKFC 600 DMVVLRKPDS SSFVENVQDQ WPNVVGFVKG FGLWRGEEVE KVREGAAVPS SLLVKKILWS 660 YDDLPYILGY HAIGFTVTFC ALSRSSQDRV VCTDLYSFDV SSPSDRIKAL VPCYRLASLL 720 HLLADRCTMR HLCYNDFERI SHRDFVTEIT PNTVTKYYSS KRKWSVVKGI YDFLDQRVPH 780 AEHLNSAREK ELSLSFKPRG VRVKPCNVDH LIESLMCVTR ALVALHDLSF MHRDMRWENV 840 MRSAEMTTTT SDAEWFVCGF DEAAESPQLN PHRSMDEEEE EENGRQAPEM ERGLHAVKVD 900 VWGVGYMIKT CGLTNVPKML RELQGKCLEP NQENRPTAAD CFHHLLQVQS ASSSSY

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence Send to blast

MGETTKGDAT KPSPNQISSP KDSSLDHQTP TPSPIHHHHQ SFHPSPIFIA TVSSPGAPII  60
PKRPRFISSS GLSPPQWKAL PSPSTLPTAA TFPSLPSPST TVVAASSTET AASSPLEQEG  120
INTEKQQLET DSFQHKFRKG KYVSPVWKPH EMLWLAKAWR VQYQKQETGP GSGSGEGRGK  180
TRAEKDREVA EFLNRNGVNR DSKIAGTKWD NMLGEFRKVN EWEKGGDREK YGKSYFRLSP  240
YERKQHRLPA SFDEEVYQEL ALFMGPRARA LSIKRCIGGA PADVTLTPPS VETLPPILHP  300
PFMTSRDDDV DNNRITSIGR GKRLALSIAG DDHPQYPYTH NIGRGSGLFS NRSYFNPSFE  360
TIPSSSSSLK DLRRIGKIRL TWEESVNLWA EEGEVDYGRI RVSGSSFLNA DELTYLDDSI  420
VACTMESFDD GPLRGFSLDK FISGQHLKVF GRQKSTSSSA PSPSVNMANS IGRAQLPLAV  480
PINKSISTLE FQDPSEHYLS SLRVPAANPP SLFELGRYIQ EPPPENLRFP IRRDVYKDLP  540
PGKELFFSTS TTELLDCRAI TYDIISPVMF RLSPNSVISS KDSLIPLWDD CVNRMVSKFC  600
DMVVLRKPDS SSFVENVQDQ WPNVVGFVKG FGLWRGEEVE KVREGAAVPS SLLVKKILWS  660
YDDLPYILGY HAIGFTVTFC ALSRSSQDRV VCTDLYSFDV SSPSDRIKAL VPCYRLASLL  720
HLLADRCTMR HLCYNDFERI SHRDFVTEIT PNTVTKYYSS KRKWSVVKGI YDFLDQRVPH  780
AEHLNSAREK ELSLSFKPRG VRVKPCNVDH LIESLMCVTR ALVALHDLSF MHRDMRWENV  840
MRSAEMTTTT SDAEWFVCGF DEAAESPQLN PHRSMDEEEE EENGRQAPEM ERGLHAVKVD  900
VWGVGYMIKT CGLTNVPKML RELQGKCLEP NQENRPTAAD CFHHLLQVQS ASSSSY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013610231.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013610231.1	0.0	PREDICTED: uncharacterized protein LOC106316914
Refseq	XP_013719901.1	0.0	uncharacterized protein LOC106423678
TrEMBL	A0A0D3EA64	0.0	A0A0D3EA64_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6E0P2	0.0	A0A3P6E0P2_BRAOL; Uncharacterized protein
STRING	Bo9g103570.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-08	Trihelix family protein