PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610191.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 21043.8 Da PI: 7.0617 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 6 | 55 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr++ +g+Wv+eIr+p +r++lg+f tae Aa+a+++a++ ++g XP_013610191.1 6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAALLMNG 55 89****999.**********8.....334**********************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 5 | 64 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.52E-23 | 6 | 65 | No hit | No description |
SMART | SM00380 | 4.0E-39 | 6 | 69 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-11 | 6 | 55 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-20 | 6 | 64 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.221 | 6 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MVHSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA LLMNGQNAKT 60 NFPVVKSEKG SDNVHDANSP LMSPKSLSEL LNAKLRKSCK DVTPSLTCLR LDTDSSHIGV 120 WQKRAGSKTS PNWVMRLELG NVVNESAHEL GMKKQDVEKA EDVEEEANVD EDQLAMEMIE 180 ELLNWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 6 | 63 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: The SHN2 gene shows a pattern of expression associated with anther and silique dehiscence. Expressed in the stomium region when tapetum degeneration is initiated in the anther. Up to anthesis and until stamens fell off the senescing flower, restricted to the anther dehiscence zone. Subsequently, when petals and sepals withered, found at the bottom of each valve. During silique development, strongly expressed along the valve margin-replum boundary. {ECO:0000269|PubMed:15319479}. | |||||
Uniprot | TISSUE SPECIFICITY: In flowers. {ECO:0000269|PubMed:15319479}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610191.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610191.1 | 1e-136 | PREDICTED: ethylene-responsive transcription factor SHINE 2 | ||||
Swissprot | Q9LFN7 | 1e-107 | SHN2_ARATH; Ethylene-responsive transcription factor SHINE 2 | ||||
TrEMBL | A0A0D3EGA3 | 1e-135 | A0A0D3EGA3_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g171490.1 | 1e-135 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM834 | 28 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11190.1 | 6e-99 | ERF family protein |
Publications ? help Back to Top | |||
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