PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610137.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 537aa    MW: 61450.2 Da    PI: 8.5801
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610137.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.58.9e-22124224198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f kvlt sd++++g ++l kk a e+     +++++ s+ ++ +d++  +W++k+++r++++r+++t+GWk+Fv+ + L +gD+vvF +   +++
  XP_013610137.1 124 FTKVLTASDSSTHGGFSLFKKDAIEClplldMSQQAPSQWIVAKDLHDHVWKFKHTFRGTPQRHLFTSGWKQFVRKKSLAVGDSVVFLR--GENG 216
                     89*****************************667777889************************************************3..3777 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     e ++++++
  XP_013610137.1 217 ESRIGIRK 224
                     77899987 PP
2Auxin_resp80.15.4e-27250329183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a +a++tk++F+v+Y+P++  s+F+v+++k+ +a+++k+  G+Rf m+fe+ d++e+ +sGt+v v+d  ++ W++S+Wr+L+
  XP_013610137.1 250 ALNAINTKCMFDVFYRPKS--SKFIVNCKKIIDAVNMKFNTGSRFTMKFEGRDFNEIIYSGTIVKVED-FSIYWKDSEWRNLQ 329
                     6799*************96..9**********************************************.567*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.1E-36117238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-29117248IPR015300DNA-binding pseudobarrel domain
CDDcd100177.20E-20123224No hitNo description
PfamPF023626.6E-19124224IPR003340B3 DNA binding domain
PROSITE profilePS5086311.321124226IPR003340B3 DNA binding domain
SMARTSM010191.3E-17124226IPR003340B3 DNA binding domain
PfamPF065071.4E-24250329IPR010525Auxin response factor
PfamPF023092.4E-5413536IPR033389AUX/IAA domain
PROSITE profilePS5174515.287453532IPR000270PB1 domain
SuperFamilySSF542771.08E-5455527No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MENNKIRNAQ PKFQGTDGTN RYLYNQLWKL CAGSLFDLPI IGEEVYYFPQ GHIEQLVASE  60
NDNLCQLKPI FDISSKIRCN VISIKLKVDT NTDEVYAKVS LSPCSPEFEV SIPNGNNEQN  120
INYFTKVLTA SDSSTHGGFS LFKKDAIECL PLLDMSQQAP SQWIVAKDLH DHVWKFKHTF  180
RGTPQRHLFT SGWKQFVRKK SLAVGDSVVF LRGENGESRI GIRKAAPQQS NISSSVISKE  240
SMHHGLVATA LNAINTKCMF DVFYRPKSSK FIVNCKKIID AVNMKFNTGS RFTMKFEGRD  300
FNEIIYSGTI VKVEDFSIYW KDSEWRNLQV QWDEAATIPR PNKVSLWEIK PLIRENKRQR  360
EIVSYAGLAM SKPDYNDQMV QSTKENSTTN ASSSFRLFGV DLTASTKARD VLEPLESYQK  420
SKISKIFDDE KLDQIQAVTS LTEIQTKKIR FTTSSTKVHM EGVVRTVDLT DFDGYNHMIV  480
ELEKLFNIEG KLHMHSQWKL TFKVHEGDMM LVGDDSWLKF CNTVKEIFIC SKYDAIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1162335219355Auxin response factor 1
4ldw_A1e-1162335219355Auxin response factor 1
4ldw_B1e-1162335219355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610137.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794880.0JN979488.1 Brassica rapa subsp. pekinensis auxin response factor 27 (ARF27) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610137.10.0PREDICTED: auxin response factor 22-like
SwissprotQ9LQE80.0ARFN_ARATH; Putative auxin response factor 14
TrEMBLA0A3P6E6430.0A0A3P6E643_BRAOL; Auxin response factor
STRINGBo9g076090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34390.10.0auxin response factor 22