PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610095.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 276aa    MW: 30231.2 Da    PI: 5.2288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-19144193255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     gy+GVr+++ +g+++AeIrdp+    r +r++lg+f tae+Aa+a+++a+  ++g
  XP_013610095.1 144 GYRGVRQRP-WGKFAAEIRDPK----RaTRVWLGTFETAEDAARAYDRAAIGFRG 193
                     8********.**********83....57*********************987776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-12144192IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21144202IPR016177DNA-binding domain
SMARTSM003808.0E-36144207IPR001471AP2/ERF domain
PROSITE profilePS5103224.012144201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-32145201IPR001471AP2/ERF domain
CDDcd000181.09E-21145201No hitNo description
PRINTSPR003671.5E-11145156IPR001471AP2/ERF domain
PRINTSPR003671.5E-11167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MHYPNNRPEL SSGAPSRDRD STRYPYHNQE QLSPEQELSV IVSALQHVIS GENETAPYQG  60
FSSTVISAGM PPSDSDACQV CRIDGCLGCN YFFAPNQRIE NTHQQVDAEE EDGVSSRRES  120
HVAAAKKAAE GGGKVRKRKN KKNGYRGVRQ RPWGKFAAEI RDPKRATRVW LGTFETAEDA  180
ARAYDRAAIG FRGPRAKLNF PFADYTASAS SPVGAEDVVT SASANASTSV SATESAEAEQ  240
WRGDCDMDEY LKMMMMMDFG NGDSSDSGNT IADMFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-25141202264ATERF1
3gcc_A8e-25141202264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610095.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895290.0AC189529.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610092.10.0PREDICTED: ethylene-responsive transcription factor ERF109 isoform X1
RefseqXP_013610095.10.0PREDICTED: ethylene-responsive transcription factor ERF109 isoform X2
SwissprotQ9SZ061e-112EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A3P6FR241e-177A0A3P6FR24_BRAOL; Uncharacterized protein
STRINGBra011529.1-P1e-152(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.18e-94redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]