PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610062.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 269aa MW: 30339.3 Da PI: 6.5766 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.7 | 8.2e-31 | 35 | 87 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prl+Wt +LH++Fv+av+ LGG+++AtPk +l++m+vkgLt++hvkSHLQ++R XP_013610062.1 35 PRLKWTADLHRCFVNAVDMLGGQHRATPKLVLKMMDVKGLTISHVKSHLQMHR 87 8***************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.906 | 31 | 91 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 31 | 88 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-13 | 35 | 87 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.0E-22 | 35 | 87 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.6E-8 | 36 | 87 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MGKRGGKNGN ENYDGVGFNG QGGSGVRPYV RSPVPRLKWT ADLHRCFVNA VDMLGGQHRA 60 TPKLVLKMMD VKGLTISHVK SHLQMHRGSK LTLGKPEENS LFSIRRQDTE EDYLQDYLSL 120 HIRNDCPTGF HTFSLSSHSS RGRRKEHTSE SRGGDDVDDS LHIMNLKTNE TTFPSHHFHQ 180 NTEKETNPWH EHEHEHEHEH EQEHEHEEEE ELSLSLSLNH HHLRSNGSSV SETSDAVSTC 240 SAPFVNKDCF GSSPKIDLDL NLSISLLGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-16 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-16 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-16 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-16 | 36 | 90 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610062.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM222924 | 7e-59 | HM222924.1 Thellungiella parvula phosphatase, cyclin J18, clathrin assembly protein-related protein, BPC1, SGR5/ATIDD15, leucine-rich receptor kinase, endomemebrane protein 70, salt overly sensitive 1, glutamate decarboxylae 4, oligopeptide transport protein, peptide transporter, and NADH-ubiquinone oxidoreductase B18 genes, complete cds; and unknown genes. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610062.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
Swissprot | Q700D9 | 4e-58 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A0D3E7I7 | 0.0 | A0A0D3E7I7_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g071530.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4694 | 18 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 8e-79 | G2-like family protein |