PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610026.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 304aa    MW: 34867.9 Da    PI: 9.3859
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610026.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.98e-1819113198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ffkvl ++d +++ +  +p +f+++++ k e s++++l+ ++g sW++ l  +k+++   y+ ++GW +F ++ngL + + ++F+++g+++f  +
  XP_013610026.1  19 FFKVLRKEDLSSQTMREIPQDFLKSISAK-EFSFKMVLKLPWGSSWRIDL--SKYQSFfyYMEQNGWDQFLSDNGLGDDELLTFTHKGNMCF--N 108
                     99*********************999755.799*****************..999888889999****************************..8 PP

                     EEEE- CS
              B3  94 vkvfr 98 
                     v++++
  XP_013610026.1 109 VSIYK 113
                     87765 PP
2B352.68.1e-17218295487
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     + ++s+vl +g   +pk+fae h+ k  e++  ++ d++g +sWev++ ++k ++   +++GW + vk+ gL++gD+++F+l++ 
  XP_013610026.1 218 TIKKSYVLFLG---VPKRFAEMHMPK--EETVFKIHDPKGkKSWEVTYVVSKIQS--RFSRGWPGLVKDFGLEVGDVCTFELIKP 295
                     55667777665...9*****999855..45589999*99989******5555555..599*********************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-1913116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1914119IPR015300DNA-binding pseudobarrel domain
CDDcd100173.82E-1817113No hitNo description
SMARTSM010192.4E-2019115IPR003340B3 DNA binding domain
PROSITE profilePS5086313.23919115IPR003340B3 DNA binding domain
PfamPF023624.0E-1519112IPR003340B3 DNA binding domain
PROSITE profilePS5086312.746212304IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-19213302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-20213302IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.1E-17215303IPR003340B3 DNA binding domain
CDDcd100171.30E-17215296No hitNo description
PfamPF023627.9E-14218297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MATNNYIAKL MEESDNPGFF KVLRKEDLSS QTMREIPQDF LKSISAKEFS FKMVLKLPWG  60
SSWRIDLSKY QSFFYYMEQN GWDQFLSDNG LGDDELLTFT HKGNMCFNVS IYKTDCVEIL  120
RPKRSATIAS SSRNKREEVN NVLEEERESL SASNYPVSET AESTVGGRLK QKRQLINLGK  180
KQVKKAEKAN KCKKRKMDTE SDDSEAGTSS LVSEFTLTIK KSYVLFLGVP KRFAEMHMPK  240
EETVFKIHDP KGKKSWEVTY VVSKIQSRFS RGWPGLVKDF GLEVGDVCTF ELIKPTEMIL  300
TVSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610026.10.0PREDICTED: B3 domain-containing protein At5g18000
SwissprotQ9FJG21e-114Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLA0A0D3EEJ50.0A0A0D3EEJ5_BRAOL; Uncharacterized protein
STRINGBo9g157490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-110VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]