PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013610017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 201aa MW: 22167.1 Da PI: 7.9435 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.6 | 2e-19 | 89 | 123 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C t++TplWR+gp g+k+LCnaCG++++k+++ XP_013610017.1 89 CASCDTSSTPLWRNGPKGPKSLCNACGIRFKKEEK 123 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.27 | 83 | 119 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.8E-18 | 83 | 135 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.38E-13 | 83 | 124 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.7E-17 | 87 | 123 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.55E-13 | 88 | 120 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 89 | 114 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.7E-17 | 89 | 123 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MMGYQTNANF SMLYDQDHPH NYDYDDLSSS TSVDCTLSLG TPSTRLDKHR RFSSANSNNI 60 SGDFFFHGGS AKTTSYKKSG SEHNLPRRCA SCDTSSTPLW RNGPKGPKSL CNACGIRFKK 120 EEKRAAARNS ITSGGGSSVA EVPAENPYNG GGNYYTHHHH ASSSPSWAHQ NTQRVQYFSP 180 APEMEYPFVD DVTAASFMSW N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013610017.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610017.1 | 1e-150 | PREDICTED: GATA transcription factor 20 | ||||
Refseq | XP_013651465.1 | 1e-150 | GATA transcription factor 20 | ||||
Swissprot | Q9ZPX0 | 1e-108 | GAT20_ARATH; GATA transcription factor 20 | ||||
TrEMBL | A0A078IMK8 | 1e-149 | A0A078IMK8_BRANA; BnaC09g09760D protein | ||||
TrEMBL | A0A0D3E3A5 | 1e-149 | A0A0D3E3A5_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g026020.1 | 1e-150 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6159 | 17 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 1e-101 | GATA transcription factor 20 |
Publications ? help Back to Top | |||
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