PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610011.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 320aa    MW: 35600.2 Da    PI: 5.8672
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610011.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.7e-18221255135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_013610011.1 221 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 255
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.0E-811310IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.464215251IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-16215265IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-15217279No hitNo description
Gene3DG3DSA:3.30.50.101.7E-14217252IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.42E-15220267No hitNo description
PfamPF003201.1E-15221255IPR000679Zinc finger, GATA-type
PROSITE patternPS003440221246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEEEAHEFFH TADHFSVDDL LVDFPNDEDE ENDLIADSDG ADTTTAVADS SNSSSFSNTG  60
FPTFHGDVQD GTSFSGDLCV PSDELAELEW LSNFVEDSFS TEHVQKLQLK PGYKTRPDSK  120
SEPGRKTLKS SSPVFTTDVS VPAKARSKRS RAAACNWASR ELPKEAFYDN PFTGETIISS  180
LYLSPPSSPT LTAQLWRKLA VDASRRKKDS STDSGEDERR CLHCATDKTP QWRTGPMGPK  240
TLCNACGVRY KSGRLVPEYR PVASPTFVLS KHSNSHRKVM QLRRQKEMTK SHHDHHGKDT  300
AMILDVSSDG DDYLIHHNVV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013610011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728830.0AC172883.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH125N23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610011.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697811e-153GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A0D3E1B30.0A0A0D3E1B3_BRAOL; GATA transcription factor
TrEMBLA0A3P6E1R50.0A0A3P6E1R5_BRAOL; GATA transcription factor
STRINGBo9g011180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-132GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]