PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609991.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 346aa    MW: 37839.3 Da    PI: 7.8527
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609991.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0004137159123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_013609991.1 137 YQCKTCDRTFPSFQALGGHRASH 159
                     9***********99999998887 PP
2zf-C2H212.50.00044213235123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg  F++   L  H+r+H
  XP_013609991.1 213 HECGVCGAEFTSGQALGGHMRRH 235
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.78E-8136159No hitNo description
PfamPF139122.0E-12136161IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471137164IPR007087Zinc finger, C2H2
SMARTSM003550.028137159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-8208235No hitNo description
Gene3DG3DSA:3.30.160.605.0E-4211237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-11212237IPR007087Zinc finger, C2H2
PROSITE profilePS501579.951213237IPR007087Zinc finger, C2H2
SMARTSM003550.054213235IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEAFEEAIAA SKEQSLIFKG KRTKRQRPQS PIPFSIISPP IVSSHAHDIQ EESKKDGVIT  60
SSSSSASWSS NNNATLKAEE DEEEQEIANC LILLSQGHSL PLPNHEANNN NTYRFSSRRF  120
LETSSSNGGD KAGYYVYQCK TCDRTFPSFQ ALGGHRASHK KPKATLSSYS NIDVKKNIYE  180
SNAVSLVTTS TIYKNNNNRS LAVYGKAGSN KVHECGVCGA EFTSGQALGG HMRRHRGAVV  240
IAAAPVTTVT VATAAANTEL SLSSMSFDQI SDGQDHLVMP ATKRAKKTVV SLDLDLNLPA  300
PEDENRVNGF TFALKQKQEQ EHQPTMQREE PKCLLMSAPT LVDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609991.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609991.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A0D3EHW30.0A0A0D3EHW3_BRAOL; Uncharacterized protein
STRINGBo9g180060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-154C2H2 family protein