PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013609954.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 514aa MW: 56507.4 Da PI: 5.7777 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.1 | 5.8e-31 | 277 | 335 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d +++++tYeg+Hnh+ XP_013609954.1 277 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDRSILITTYEGNHNHP 335 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.6E-34 | 261 | 337 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-28 | 269 | 337 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.838 | 271 | 337 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-38 | 276 | 336 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-27 | 278 | 335 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MFRFPVSLGG QGDNLKQTQP SDEQHHRPIM DEVDFFRSEK RDDQNVITEE THRLHVKREN 60 SRVDDDDDRS MGINTGLNLL TANTGSDESL VDDGLSVDME EKRTKIENTQ LREELKKSNE 120 ENQRLKEMLS QTTNNFNSLQ MQLVAVMRQE EDHHHLATIE SKDKDTNRHE APEMVPRQFI 180 DLGLPSAEVS SDERITSRSP QSLLEDSSSR QRAKRVLEIE ESPENESNGW GNPSKVSKHN 240 ASSSNGNGNA IDQSAAEATM RKARVSVRAR SEAPMLSDGC QWRKYGQKMA KGNPCPRAYY 300 RCTMAVGCPV RKQVQRCADD RSILITTYEG NHNHPLPPAA MYMASTTTAA ASMLLSGSTM 360 SNQDGLMNPT NLFARTMLTC SSSMATISAS APFPTITLDL TESASDVNGP TNNNPLMQFA 420 QRSGFAELNQ SGLPQMMGQA LYYNQQQSKF SGLHIPSQSL NAGESVNAAM PANPNFAAAL 480 AAAITSIING SSNHQNGSSN SSNNNVTTSS GDRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-22 | 263 | 339 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00428 | DAP | Transfer from AT4G04450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013609954.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ384110 | 0.0 | FJ384110.1 Brassica napus cultivar Westar WRKY transcription factor 42 (WRKY42) mRNA, WRKY42-2 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609954.1 | 0.0 | PREDICTED: probable WRKY transcription factor 42 | ||||
Swissprot | Q9XEC3 | 0.0 | WRK42_ARATH; WRKY transcription factor 42 | ||||
TrEMBL | A0A0D3E8A1 | 0.0 | A0A0D3E8A1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6E6F1 | 0.0 | A0A3P6E6F1_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g078130.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 0.0 | WRKY family protein |