PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609905.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 346aa    MW: 38923.5 Da    PI: 7.0238
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609905.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.61.8e-30192247156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k r++W++eLH+rF++ ++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYR++
  XP_013609905.1 192 KHRRCWSHELHRRFLNTLKQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRMH 247
                     68****************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.545189249IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-26190250IPR009057Homeodomain-like
SuperFamilySSF466896.54E-17190250IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-26192247IPR006447Myb domain, plants
PfamPF002491.3E-5194245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MINSLSNMKN YNEKRVRCCE YIKALEEERR KINVFQRELP LCLELVTQAI ETYKKEISEP  60
TMENLCGQSE CSEQTTGECG GILDLFRPIK HSSTSLEGEE EEVDVDDEHE SNETGLDCDD  120
KNMKSEWLKS VQLWNQPDSV LSNKLERSQQ ETETVVEAIN GNDNGTTGRQ KMEAEKDISG  180
GSGGSGGIGR RKHRRCWSHE LHRRFLNTLK QLGGPHVATP KQIRELMKVD GLTNDEVKSH  240
LQKYRMHTRR PGQTIPNKRD SQTQHFVVVG GIWVPQASHS TANAATAGET TIGIYGPLQS  300
EWPSQSNFGR TISEERSRCS NKGIIRCSSP AMSSSTRTKT KDPKLS
Functional Description ? help Back to Top
Source Description
UniProtProbable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269|PubMed:25723764}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609905.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609905.10.0PREDICTED: two-component response regulator ARR10-like
SwissprotQ9LS001e-165HHO1_ARATH; Transcription factor HHO1
TrEMBLA0A078HQZ30.0A0A078HQZ3_BRANA; BnaC09g21560D protein
STRINGBo9g075880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136001827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25790.11e-165G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]