PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013609883.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 334aa MW: 38163.5 Da PI: 6.4419 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.8 | 5.9e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl XP_013609883.1 15 KGPWTPEEDQKLIDYINKHGYGNWRTLPKNAGLERCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.2e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e++++++ +G++ W++Ia++++ gRt++++k++w+++ XP_013609883.1 68 RGRFSFEEEEIIIQLHSIMGNK-WSAIAARLP-GRTDNEIKNYWNTH 112 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.715 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.83E-32 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-25 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.59E-13 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.598 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.88E-13 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-27 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MGRSPCLDKK IGLKKGPWTP EEDQKLIDYI NKHGYGNWRT LPKNAGLERC GKSCRLRWTN 60 YLRPDIKRGR FSFEEEEIII QLHSIMGNKW SAIAARLPGR TDNEIKNYWN THIRKRLLKL 120 GIDPVTHSPR LDLLDISSIL SSSVYNSSHH HQQNMLRLMM GDGHHHHQPL VNPEILKLAT 180 SLFSNSQQQC KNQNNPTNTH EVNQPEVNQY QTAYNIIGNQ ELQSCFPSMD QFAEFQDPMP 240 TTTFPDSVHS LPLNQDYDYS TSNFALEPFY SDFASVLATP SSSPTPLDSS STTYINSSTC 300 STEDEKESYC NNNFMNSSEI GPDYSFDVNG FLQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in flowers and at lower levels in rosette leaves and cauline leaves. Expressed at low levels in roots, stems and siliques. {ECO:0000269|PubMed:26139822}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in salt stress response. {ECO:0000305|PubMed:26139822}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00429 | DAP | Transfer from AT4G05100 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013609883.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:26139822}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF386932 | 1e-168 | AF386932.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. | |||
GenBank | BT001182 | 1e-168 | BT001182.1 Arabidopsis thaliana Unknown protein (At4g05100) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609883.1 | 0.0 | PREDICTED: protein ODORANT1 | ||||
Swissprot | Q9M0Y5 | 1e-161 | MYB74_ARATH; Transcription factor MYB74 | ||||
TrEMBL | A0A0D3E828 | 0.0 | A0A0D3E828_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g076410.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 1e-150 | myb domain protein 74 |
Publications ? help Back to Top | |||
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