PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013609825.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 231aa MW: 25327.5 Da PI: 9.5821

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013609825.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.9	1.1e-13	94	138	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++++ ++lG+g+W+ I+r + ++++ q+ s+ qky XP_013609825.1 94 PWTEEEHRTFLNGLEKLGKGDWRGISRNFVVTKSPTQVASHAQKY 138 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.829	3	18	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	18.722	86	143	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-16	89	143	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-19	90	142	IPR006447	Myb domain, plants
SMART	SM00717	1.6E-10	91	141	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-10	91	137	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-11	94	138	IPR001005	SANT/Myb domain
CDD	cd00167	1.23E-9	94	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MGRRCSNCGN VGHNSRTCSS YKTRVIRLFG VHVDTRGSSP QPPPPPPSSL LAAAMKKSFS 60 MDCLPACSTS SSSFAGYLSD GLTHRTPDRK KGVPWTEEEH RTFLNGLEKL GKGDWRGISR 120 NFVVTKSPTQ VASHAQKYFL RQATTLHHKR RRTSLFDMVF AGNVEENNTI PCNDHFGSTT 180 DVVWKQGSVN PCLGYQAPEV SESGNSVGLD LDLKLASLQT TESNIRPISV T

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269\|PubMed:12172034}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00565	DAP	Transfer from AT5G56840	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013609825.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013609825.1	1e-174	PREDICTED: uncharacterized protein LOC106316480
Refseq	XP_013729123.1	1e-174	transcription factor MYBS3-like
Swissprot	Q7XC57	4e-44	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A0D3EBW0	1e-172	A0A0D3EBW0_BRAOL; Uncharacterized protein
STRING	Bo9g127350.1	1e-173	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5496	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	1e-124	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]