PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609789.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 428aa    MW: 47320 Da    PI: 7.5345
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609789.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.25.2e-261412334128
             NAM  34 ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..............tksgyWkatgkdkevlskkgelvglkktLvfy..kg 111
                     i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+                + +W++tgk+++v++ +g+++g+kk+Lv+y   g
  XP_013609789.1  14 IEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdnsmhgsssSGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFG 106
                     444437**********.555666799******************87999999999987666788************.999***********5547 PP

             NAM 112 rapkgektdWvmheyrl 128
                     +++k+ekt+Wvmh+y+l
  XP_013609789.1 107 KNRKPEKTNWVMHQYHL 123
                     999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.9261142IPR003441NAC domain
SuperFamilySSF1019417.98E-294142IPR003441NAC domain
PfamPF023657.4E-825123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MKSHPLIDEF IPTIEGEDGI CYTHPEKLPG VTRDGLSRHF FHRPSKAYTT GTRKRRKIQT  60
ECDNSMHGSS SSGETRWHKT GKTRPVMVNG KQKGCKKILV LYTNFGKNRK PEKTNWVMHQ  120
YHLGTHEEER EGELVVSKIF YQTQPRQCNW SSSTSSLNAI GGGGGEANSG GGGGEYKMRR  180
GSGTTSGGSC SSSREIMNVN PTNRSDEVGG VGGGAMAVAA AAAAVVAGLP SYAMDQLSFV  240
PFMKSFDEVA RRETLHTGQA TCDDVMAEQL RHRHQASPSS TSSHHVAHHH HQHHHQQQQR  300
YHAFNISQPT HPISTIISPS TSLHHAPVNT LDDNPYHVHR ILLPNENYQA HQQQQDQERD  360
EQHNDGKMGG RSASGLEELI MGCSSSNTHH DVKDGSSSMG NQQEAEWLKY STTFWPPPDS  420
SDNQDHHG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609789.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615740.0AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609760.10.0PREDICTED: uncharacterized protein LOC106316420 isoform X1
RefseqXP_013609773.10.0PREDICTED: uncharacterized protein LOC106316420 isoform X1
RefseqXP_013609789.10.0PREDICTED: POU domain, class 4, transcription factor 2-like isoform X3
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0D3A3J10.0A0A0D3A3J1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F7M20.0A0A3P6F7M2_BRAOL; Uncharacterized protein
STRINGBo1g016630.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.10.0NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]