PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609705.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 371aa    MW: 42155.9 Da    PI: 9.3205
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609705.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30155211258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     dDgy+WrKYGqK++k+s++prsY++Ct + C++kk+vers +dp++ +itYeg H h
  XP_013609705.1 155 DDGYKWRKYGQKSIKNSPNPRSYFKCTNSICNAKKQVERSIDDPNTYIITYEGFHLH 211
                     8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-28148211IPR003657WRKY domain
PROSITE profilePS5081126.544149211IPR003657WRKY domain
SuperFamilySSF1182901.14E-25152211IPR003657WRKY domain
SMARTSM007741.2E-35154213IPR003657WRKY domain
PfamPF031065.3E-25155211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MLIKFEYKFS TPLSLNNKNL SFSSSLSPTP APLLVCVFLS HTHMAEKEVS EWKTMYGSHA  60
LDEFIVNEPH LFFLPQEHLR LMPKENSIIN KLVSSKYDSS PRLQDFTNAL AMVEPLTHSV  120
RQISESTVPI LGRCTLRKVD RYTLKVKNNS NGMSDDGYKW RKYGQKSIKN SPNPRSYFKC  180
TNSICNAKKQ VERSIDDPNT YIITYEGFHL HFTYPFFLSN STHRSNKKPK IHNDAQFKAH  240
FEINPKSQTQ EKNKQTKLVK QDYQNCMPYA ADGSTPANLE DGFFPPLIQG RQQQGLLEDV  300
VAPAIKNIPT NDGVLAASRS SLPSYSSSTC SFSRTDSPPL YPSFFKLDSL FLNIGFSGEI  360
VQSDLVNFKH L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-181552111874Probable WRKY transcription factor 4
2lex_A2e-181552111874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609705.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609705.10.0PREDICTED: probable WRKY transcription factor 49
SwissprotQ9FHR71e-115WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBLA0A0D3E6770.0A0A0D3E677_BRAOL; Uncharacterized protein
STRINGBo9g059010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-116WRKY DNA-binding protein 49