PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013609639.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 231aa MW: 24805.3 Da PI: 8.3822 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ CgksFs+ L H +H XP_013609639.1 88 YKCTVCGKSFSSYQALGGHKTSH 110 9***********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.63E-10 | 87 | 110 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.9E-5 | 88 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0028 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.0E-13 | 88 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.094 | 88 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.63E-10 | 147 | 174 | No hit | No description |
Pfam | PF13912 | 9.1E-11 | 151 | 176 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.82 | 152 | 174 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 152 | 174 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 154 | 174 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVLETLNSPT SATAAARPFL RYREEMEPEN LEQWAKRKRT KRQRFDHNQE KTPSEEEYLA 60 LCLLMLARGS TVKSPPPPSL PSSDHRGYKC TVCGKSFSSY QALGGHKTSH RKPVNTINGP 120 SAQEPSNKTH GNSNGGSIVI NGNGVSQSGK THTCSICFKS FSSGQALGGH KRCHYDGGNN 180 GNGSSSNSVE VIGGSDVSDV DDERSSEQSA IGGHRGFDLN LPADQVTVVI S |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013609639.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189526 | 0.0 | AC189526.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092J12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609639.1 | 1e-172 | PREDICTED: zinc finger protein AZF1-like | ||||
Swissprot | Q9SSW1 | 1e-107 | AZF1_ARATH; Zinc finger protein AZF1 | ||||
TrEMBL | A0A0D3E2G1 | 1e-171 | A0A0D3E2G1_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g019120.1 | 1e-172 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3121 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67450.1 | 3e-87 | zinc-finger protein 1 |
Publications ? help Back to Top | |||
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