PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609564.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 550aa    MW: 59613.7 Da    PI: 6.2997
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609564.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.3e-30231290159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+H h+
  XP_013609564.1 231 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHSHP 290
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31216292IPR003657WRKY domain
SuperFamilySSF1182902.09E-27224292IPR003657WRKY domain
PROSITE profilePS5081128.69226292IPR003657WRKY domain
SMARTSM007741.5E-36231291IPR003657WRKY domain
PfamPF031066.7E-27232290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MEVILKLPTS DSLLKDKVLG SAQIHEATKV EEDHQELESA KAEMREVKED NEKLKGMLER  60
IESDYKTLKL RFFDIIHQEE PSNNQTQDQN MIDLPKATTD LSSLDQEREL VSLSLGRRSS  120
SPSDNSSKKE EKTDETSNKV NDDEDLTKVG LTLGFNSGNG PDPSVANPAN SSLENNLEDA  180
PGETWPPSKV SGKRSSPAPA SGGHVDGEGG QQNPVKRARV CVRARCDTPT MNDGCQWRKY  240
GQKIAKGNPC PRAYYRCTVA PGCPVRKQVQ RCAEDMSILI TTYEGTHSHP LPLSATTMAS  300
TTSAAASMLL SGSSSSSTAE MIGNNLYDNS RFINNNNKSF YSPTLHSPLH PTVTLDLTAP  360
QHSSSSLPSL NFNKFPNSFQ RFPSTSLNFS SNSSSSNSSL LNLPATWGNG YSSYTPYPYN  420
NVQFGTSNQV KTVQNNQSLT ETLTKALTSD PSFHSVIAAA ISSMVGSNGE QQMVGPRHPT  480
SDSVQRTAAT ENNKGRGGYF SSLLMSNIIA NNQTGASLDQ PSSQLTSLSM FNNSSSSSST  540
TSFVNKEEKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21218292174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609564.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300780.0KF430078.1 Brassica rapa WRKY transcription factor 72 (WRKY72) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609564.10.0PREDICTED: probable WRKY transcription factor 72
SwissprotQ9LXG80.0WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A0D3EFD90.0A0A0D3EFD9_BRAOL; Uncharacterized protein
STRINGBo9g165380.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.10.0WRKY DNA-binding protein 72