PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609554.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 335aa    MW: 37789.1 Da    PI: 7.4146
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609554.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.13e-31190244155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWt++LHe+Fv +v+ LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  XP_013609554.1 190 KTRIRWTQDLHEKFVACVNLLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 244
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.81E-17188244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-27190244IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-22190244IPR006447Myb domain, plants
PfamPF002499.8E-8194243IPR001005SANT/Myb domain
PfamPF143796.6E-21257304IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MFLMQNWQSE TLMDNINFES SNASQGSRLQ AQQPFHLQDV NMIHFNQSSP WTTETFSGFT  60
PYDCTVNQYF PVQCSSSKPY PPSFHQSSSL YQSQSMVPMQ PLQDQYQRSR ANDFAATNAS  120
SGSYTLSFEA SQDPQELSRK TYSNSNVTPL NFSSSHHQPK QTHPRFSPPS SLSTHGGSVA  180
PNSGAVIGTK TRIRWTQDLH EKFVACVNLL GGADKATPKA ILKLMDSEGL TIFHVKSHLQ  240
KYRIVKYIPE SQEGSGVQIK EALQVQLDVQ RDLHEQLEIQ RNLQLRIEEQ GKQLKRMIEQ  300
QQKTKESLLK TPNAETSSSL SDSDHSPRLF SVQDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2266442e-47AK226644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-39-G11.
GenBankBT0126582e-47BT012658.1 Arabidopsis thaliana At5g06800 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609554.10.0PREDICTED: uncharacterized protein LOC106316228 isoform X2
SwissprotQ0WVU31e-162PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A0D3EH870.0A0A0D3EH87_BRAOL; Uncharacterized protein
STRINGBo9g175820.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-162G2-like family protein