PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609552.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 366aa    MW: 41713.5 Da    PI: 6.792
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.93.4e-31190244155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWt++LHe+Fv +v+ LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  XP_013609552.1 190 KTRIRWTQDLHEKFVACVNLLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 244
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-17188244IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-22190244IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.3E-27190244IPR009057Homeodomain-like
PfamPF002491.1E-7194243IPR001005SANT/Myb domain
PfamPF143797.5E-21288335IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MFLMQNWQSE TLMDNINFES SNASQGSRLQ AQQPFHLQDV NMIHFNQSSP WTTETFSGFT  60
PYDCTVNQYF PVQCSSSKPY PPSFHQSSSL YQSQSMVPMQ PLQDQYQRSR ANDFAATNAS  120
SGSYTLSFEA SQDPQELSRK TYSNSNVTPL NFSSSHHQPK QTHPRFSPPS SLSTHGGSVA  180
PNSGAVIGTK TRIRWTQDLH EKFVACVNLL GGADKATPKA ILKLMDSEGL TIFHVKSHLQ  240
KYRIVKYIPE SQEGNFEKRS CSEEFDTETY VLLFFFWVPR PCFLYDGVQI KEALQVQLDV  300
QRDLHEQLEI QRNLQLRIEE QGKQLKRMIE QQQKTKESLL KTPNAETSSS LSDSDHSPRL  360
FSVQDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-21190247259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609552.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2266442e-47AK226644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-39-G11.
GenBankBT0126582e-47BT012658.1 Arabidopsis thaliana At5g06800 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609552.10.0PREDICTED: uncharacterized protein LOC106316228 isoform X1
SwissprotQ0WVU31e-167PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A3P6EGG90.0A0A3P6EGG9_BRAOL; Uncharacterized protein
STRINGBo9g175820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-167G2-like family protein