PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609444.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 240aa    MW: 26530.6 Da    PI: 5.237
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.6e-18132182255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp + g  +r++lg+f  ae+Aa a+++a+ +++g
  XP_013609444.1 132 HYRGVRQRP-WGKFAAEIRDPAKFG--ARVWLGTFEKAEDAALAYDRAAFRMRG 182
                     8********.**********97654..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-30131190IPR001471AP2/ERF domain
CDDcd000181.37E-31131191No hitNo description
PROSITE profilePS5103223.275132190IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22132192IPR016177DNA-binding domain
SMARTSM003805.6E-37132196IPR001471AP2/ERF domain
PfamPF008474.4E-12132182IPR001471AP2/ERF domain
PRINTSPR003674.0E-10133144IPR001471AP2/ERF domain
PRINTSPR003674.0E-10156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MYGQGEIMAA TETEYAVLES IRRHLLGGET ELQFSESIPS SCFTESWGDL PLKENDSEDM  60
LVYGVLNDAF NRAACETSSP SSDLSCLSDF LDKPPANPSH NDFPAVKTEP AENLAAVAEK  120
PKEVAPPAKG KHYRGVRQRP WGKFAAEIRD PAKFGARVWL GTFEKAEDAA LAYDRAAFRM  180
RGSRALLNFP WRVNSGEPDP VRIPSKRSYT SSSSSDNGTP KRRRNTEEVP SELQVKCEVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-41128197170ATERF1
3gcc_A3e-41128197170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609444.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834930.0AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609444.11e-178PREDICTED: ethylene-responsive transcription factor 2-like
RefseqXP_013712964.11e-178ethylene-responsive transcription factor 2
SwissprotO803381e-100EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLU6BG781e-177U6BG78_BRAOT; ERF2 transcription factor protein
STRINGBo9g069400.11e-178(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.14e-85ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]