PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013609413.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YC | ||||||||
Protein Properties | Length: 220aa MW: 24221.1 Da PI: 4.5948 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.3 | 7e-56 | 41 | 144 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kace+filelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl XP_013609413.1 41 QLQMFWNYQrteIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACEIFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 135 89*****999999********************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr+e XP_013609413.1 136 VDIVPREEE 144 ******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.46E-33 | 35 | 135 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-20 | 63 | 126 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 7.5E-37 | 64 | 141 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDNNNQQPPP PTSAAVIPPP GSTPVSPSRG ASSYHELLQQ QLQMFWNYQR TEIEQVNDFK 60 NHQLPLARIK KIMKADEDVR MISAEAPILF AKACEIFILE LTIRSWLHAE ENKRRTLQKN 120 DIAAAITRTD IFDFLVDIVP REEEEEEEAA APAPAPYYYP PMGQPAGTMI GRPVVDHGGV 180 YAQPQSQVWQ SVWQSSGGGE DVSIGSGGSS GGHGNIDNQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-54 | 49 | 141 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 119 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.5929 | 1e-111 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013609413.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU941211 | 0.0 | EU941211.1 Zea mays clone 1394635 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609413.1 | 1e-163 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q9FMV5 | 2e-98 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A0D3E218 | 1e-162 | A0A0D3E218_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g017690.1 | 1e-163 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 6e-74 | nuclear factor Y, subunit C4 |