PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013609375.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 400aa MW: 44881.1 Da PI: 6.3637

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013609375.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.4	5.9e-33	223	281	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+ gC vkk+vers++dp +v +tYeg+H+h+ XP_013609375.1 223 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPYIVMTTYEGQHTHP 281 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.2E-34	208	283	IPR003657	WRKY domain
SuperFamily	SSF118290	9.42E-30	215	283	IPR003657	WRKY domain
PROSITE profile	PS50811	32.73	218	283	IPR003657	WRKY domain
SMART	SM00774	3.2E-39	223	282	IPR003657	WRKY domain
Pfam	PF03106	1.6E-26	224	281	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MEKKIEEDQH HQQQQQKELL NSSKNTETKI QHQEEQQQQI LQGAPSSHMA NLDTSSDHHH 60 HQLELANNIN LSSIFDAPLS SPFPYSYLEE PNPFLDLLSQ DHHQFASSSN SSSFSFDAFP 120 LENNNTNLFN TDLPLSQPST TKATSSEVVN TATTSPNSTS VSSSSKEAVN DNTDKEVTLK 180 DPEEGDQQEQ KDTKPQLKAK TKNQKKAREA RFAFLTRSDI DNLDDGYRWR KYGQKAVKNS 240 PYPRSYYRCT TVGCGVKKRV ERSSDDPYIV MTTYEGQHTH PFPMTRGHIA MFTSPILNHG 300 ATTASSSSFS IPQPRYLLTQ HHQPYSSMYN NSLSMINQSS SDGTFANPGS SSFPVFSYDV 360 SLASTSTTSA IRDHGLLQDI LPSQIMSNTI DTRTNEKDRI

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MEKKIEEDQH HQQQQQKELL NSSKNTETKI QHQEEQQQQI LQGAPSSHMA NLDTSSDHHH  60
HQLELANNIN LSSIFDAPLS SPFPYSYLEE PNPFLDLLSQ DHHQFASSSN SSSFSFDAFP  120
LENNNTNLFN TDLPLSQPST TKATSSEVVN TATTSPNSTS VSSSSKEAVN DNTDKEVTLK  180
DPEEGDQQEQ KDTKPQLKAK TKNQKKAREA RFAFLTRSDI DNLDDGYRWR KYGQKAVKNS  240
PYPRSYYRCT TVGCGVKKRV ERSSDDPYIV MTTYEGQHTH PFPMTRGHIA MFTSPILNHG  300
ATTASSSSFS IPQPRYLLTQ HHQPYSSMYN NSLSMINQSS SDGTFANPGS SSFPVFSYDV  360
SLASTSTTSA IRDHGLLQDI LPSQIMSNTI DTRTNEKDRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-27	216	283	10	77	Probable WRKY transcription factor 4
2lex_A	1e-27	216	283	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013609375.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430080	0.0	KF430080.1 Brassica rapa WRKY transcription factor 75 (WRKY75) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013609375.1	0.0	PREDICTED: probable WRKY transcription factor 48
Refseq	XP_022568430.1	0.0	probable WRKY transcription factor 48
Swissprot	Q9FGZ4	1e-144	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A0D3E0Y5	0.0	A0A0D3E0Y5_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6DNT0	0.0	A0A3P6DNT0_BRAOL; Uncharacterized protein
STRING	Bo9g009900.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-139	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]