PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013609327.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YA | ||||||||
Protein Properties | Length: 267aa MW: 29672.5 Da PI: 9.4983 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 91.4 | 1.2e-28 | 127 | 183 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+ ++k+++ ++py+h+SRh hA+rRpRgsgGrF XP_013609327.1 127 GTIYVNSKQYHGIIRRRQSRAKAVLKNKISSCRKQPYMHHSRHLHAMRRPRGSGGRF 183 689**************************9999***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.9E-31 | 124 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.221 | 125 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.8E-20 | 128 | 150 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.4E-24 | 128 | 183 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.8E-20 | 160 | 183 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MQTEYCKERE ELFSPPQASC LWNIAFGPPA LTTESLSSDS FPGVKVVTQE TGSEQGGGKS 60 SRDHVSKPHV AFSMQSSCFE FGFAQPTIYT KHPDHVEQYY GVVSGYGSQI SPGRVMLPLK 120 METEEDGTIY VNSKQYHGII RRRQSRAKAV LKNKISSCRK QPYMHHSRHL HAMRRPRGSG 180 GRFLNTKKAD ADLQSKPSNP QSSEVFHPKN RTMTSSMETY GPNVSSSDVT SMNHFLSSSV 240 HSIGGNMVMP SKWIAEAMDI GCCKLKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-15 | 129 | 191 | 5 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013609327.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC787687 | 1e-177 | KC787687.1 Brassica napus transcription factor subunit NF-YA10.1 (NF-YA10.1) gene, complete cds. | |||
GenBank | KC787688 | 1e-177 | KC787688.1 Brassica napus transcription factor subunit NF-YA10.2 (NF-YA10.2) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609327.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 | ||||
Refseq | XP_013609328.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 | ||||
Swissprot | Q8LFU0 | 1e-123 | NFYAA_ARATH; Nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | A0A0D3EHB5 | 0.0 | A0A0D3EHB5_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g176100.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 1e-125 | nuclear factor Y, subunit A10 |
Publications ? help Back to Top | |||
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