PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013609294.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 309aa MW: 35948.8 Da PI: 6.5094 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.2e-18 | 114 | 166 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+ +Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k XP_013609294.1 114 KKRLSLEQVMALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 166 556899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.5 | 2.7e-41 | 112 | 203 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rls eqv +LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++e+L++el XP_013609294.1 112 EKKKRLSLEQVMALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLANNEKLHAELV 203 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.44E-19 | 100 | 170 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.1E-18 | 111 | 172 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.584 | 112 | 168 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.01E-16 | 113 | 169 | No hit | No description |
Pfam | PF00046 | 2.1E-15 | 114 | 166 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-19 | 115 | 176 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 139 | 148 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 143 | 166 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 148 | 164 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.0E-14 | 168 | 207 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MYMYEEERNN IANNQERLRL EMAFPQHGFM FQQLHEDNTH HLPSPTSLPS CPPHLFYGGG 60 NYMMNRSMSF TGVSDHHHLT QKSPTTTNMH DQDQVGEEDN LSDDGSHMML GEKKKRLSLE 120 QVMALEKSFE LGNKLEPERK MQLAKALGLQ PRQIAIWFQN RRARWKTKQL ERDYDSLKKQ 180 FDVLKSDNDS LLANNEKLHA ELVALKKQDR QESAKIKREI AEASWSNNES TENDNNNSDI 240 NHVNMIKDLF PSSIRSATTT TTSAHTDHQM VQDQGFCNMF SSIDETTSGS YWTWPDQQQQ 300 HHNHHHHFN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 168 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013609294.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229364 | 0.0 | AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06. | |||
GenBank | BT044059 | 0.0 | BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609294.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT7-like | ||||
Swissprot | Q00466 | 0.0 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | A0A0D3EFD7 | 0.0 | A0A0D3EFD7_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g165360.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3095 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 1e-151 | homeobox 3 |