PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013609292.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 139aa MW: 16050.9 Da PI: 10.0143 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 25.1 | 3.7e-08 | 15 | 81 | 4 | 63 |
XCHHHCHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKka.......eieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+ +rk +NRe+ArrsR++K++ ei Le+++ke ++ k + +l++l+ e a l+se+ XP_013609292.1 15 EKKRKRKLSNRESARRSRLKKQKmmedtihEISTLERRIKEYSERCKVARRRLDSLESENAGLRSEK 81 5999******************933333334557999999999999999999999999999888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.3E-10 | 10 | 95 | No hit | No description |
SMART | SM00338 | 9.7E-10 | 12 | 76 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.53 | 14 | 77 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.8E-7 | 16 | 81 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.41E-7 | 16 | 70 | No hit | No description |
CDD | cd14702 | 2.89E-10 | 17 | 68 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 19 | 34 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MANAEKTSSG SDIDEKKRKR KLSNRESARR SRLKKQKMME DTIHEISTLE RRIKEYSERC 60 KVARRRLDSL ESENAGLRSE KTWLSSYVRD LENMMATTSL TLTQSGGDEQ EANADGDCRR 120 RPWQQYGSDS LQPVASFKT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 21 | EKKRKRKL |
2 | 15 | 20 | KKRKRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in seeds during late stage of development. {ECO:0000269|PubMed:18841482}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both shoots, including young leaves, stipulae and trichomes (except in cotyledons and hypocotyl), and roots, including vascular tissues (e.g. in both the phloem and the xylem). Present in seeds and pollen. Restricted to vasculatures and roots in the presence of sucrose or glucose. {ECO:0000269|PubMed:18841482, ECO:0000269|PubMed:20080816}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters involved in sugar signaling. Activated by low energy stress both at transcriptional and post-transcriptional mechanisms. Promotes dark-induced senescence and participates in the transcriptional reprogramming of amino acid metabolism during the dark-induced starvation response (PubMed:20080816, PubMed:21278122). Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter (PubMed:24243147). {ECO:0000269|PubMed:20080816, ECO:0000269|PubMed:21278122, ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013609292.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Reversibly repressed by glucose and mannose. Slowly induced by Pseudomonas syringae. Induced in roots upon cold and salt stress but then repressed in leaves. Promoted by low energy stress and dark-induced starvation. {ECO:0000269|PubMed:18841482, ECO:0000269|PubMed:20080816, ECO:0000269|PubMed:21278122}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352759 | 1e-116 | AK352759.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-E19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609292.1 | 8e-98 | PREDICTED: basic leucine zipper 1-like | ||||
Swissprot | Q9FGX2 | 4e-74 | BZIP1_ARATH; Basic leucine zipper 1 | ||||
TrEMBL | A0A0D3E0X6 | 2e-96 | A0A0D3E0X6_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g009810.1 | 3e-97 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12581 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49450.1 | 2e-76 | basic leucine-zipper 1 |