PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609213.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 451aa    MW: 51076.6 Da    PI: 4.5298
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07379434147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      r+ WT+eE+  l+ +v+++  +      W++I ++ +    ++Rt+ ++k++w++ 
   XP_013609213.1 379 RLLWTPEEEYMLKVGVEKFSAEakkniPWRKILEMGQkvfhETRTPSDLKDKWRNM 434
                      677******************************9999*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.107.3E-468131IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd154890.004283131No hitNo description
PROSITE profilePS500907.294374435IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.8E-9375442IPR009057Homeodomain-like
SuperFamilySSF466891.48E-9377436IPR009057Homeodomain-like
SMARTSM007172.2E-4378437IPR001005SANT/Myb domain
PfamPF139215.1E-6382445No hitNo description
CDDcd116604.21E-10382435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MRRTFMTRSK SLPIRSSRKS LDPYHPSPAS LPEEANQGVS NKRYPPQIEI GDDDVEIVTD  60
AFDGRDKKRH CVGTSEPLNL EACIVCETSD ELVYRCCGAD CLLWFHEECL NAEFGSGGGG  120
EDPANPFCPY CWFQILAVES IRLKEKAVGA EMAVFKYILD EEMRSRGEVD ERVPKGQEDS  180
VDATDIVSDQ EVEAEKVAYS SKVDEKDSDE SRGEDMALVE ETDQSEGEKE NFEVRTDKVE  240
DDEERVVTEN FQDAEDDETA GDKTTGNTCA GKERDVSPFL SMQESFSGKE HDQVQQSEKR  300
RRKRRLILNA FDSDVSSNGS TNEPNGEDAA EQMTSLTLVV TSPLGMTKNH QREDSRTTKV  360
DNSKTVRDIP IFKMDQKRRL LWTPEEEYML KVGVEKFSAE AKKNIPWRKI LEMGQKVFHE  420
TRTPSDLKDK WRNMTGARLK NKQDSTTVPG M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297305EKRRRKRRL
2298304KRRRKRR
3298305KRRRKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609213.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893050.0AC189305.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB031O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609213.10.0PREDICTED: uncharacterized protein LOC106315917 isoform X1
TrEMBLA0A0D3E0T00.0A0A0D3E0T0_BRAOL; Uncharacterized protein
STRINGBo9g009350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327