PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013609134.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 131aa MW: 14670.6 Da PI: 7.3384 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.1 | 3e-43 | 12 | 109 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dCv+apyfp e+p kfanvh++FGasnv+k+l+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+++ +l+ el+ XP_013609134.1 12 PCAACKFLRRKCTSDCVFAPYFPPEEPLKFANVHRIFGASNVSKILHEVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQREVLRLQRELE 106 7********************************************************************************************99 PP DUF260 96 llk 98 +++ XP_013609134.1 107 ETN 109 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.88 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.7E-43 | 12 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MSSSYSNYTN SPCAACKFLR RKCTSDCVFA PYFPPEEPLK FANVHRIFGA SNVSKILHEV 60 APHQREDAVN SLAYEAEARL KDPVYGCVGA ISVLQREVLR LQRELEETNV DLMRYDSFLG 120 GETSAYGGRR G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-59 | 10 | 125 | 9 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-59 | 10 | 125 | 9 | 125 | LOB family transfactor Ramosa2.1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013609134.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB018114 | 1e-118 | AB018114.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGF10. | |||
GenBank | AB164304 | 1e-118 | AB164304.1 Arabidopsis thaliana ASL3 mRNA for ASYMMETRIC LEAVES2-like gene 3 protein, partial cds. | |||
GenBank | AB473836 | 1e-118 | AB473836.1 Arabidopsis thaliana ASL3 mRNA for ASYMMETRIC LEAVES2-like 3 protein, complete cds. | |||
GenBank | AF447892 | 1e-118 | AF447892.1 Arabidopsis thaliana LOB DOMAIN 25 (LBD25) mRNA, complete cds. | |||
GenBank | CP002686 | 1e-118 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609134.1 | 3e-94 | PREDICTED: LOB domain-containing protein 25 | ||||
Refseq | XP_013609135.1 | 3e-94 | PREDICTED: LOB domain-containing protein 25 | ||||
Refseq | XP_013695924.1 | 3e-94 | LOB domain-containing protein 25 | ||||
Refseq | XP_022565578.1 | 3e-94 | LOB domain-containing protein 25 | ||||
Swissprot | Q8L8Q3 | 1e-84 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A078G3X5 | 8e-93 | A0A078G3X5_BRANA; BnaA09g02100D protein | ||||
TrEMBL | A0A0D3E0H8 | 8e-93 | A0A0D3E0H8_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g008330.1 | 1e-93 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 5e-74 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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