PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609102.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 217aa    MW: 25020.1 Da    PI: 9.0187
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-164388148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T +E+ l +++++ +G++ W++Ia++++ gRt++++k++w++++
   XP_013609102.1 43 RGKMTHQEERLVLELHATWGNR-WSKIAKKLP-GRTDNEIKNYWRTHM 88
                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.6137IPR017877Myb-like domain
SuperFamilySSF466894.18E-222392IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-92349IPR009057Homeodomain-like
PROSITE profilePS5129426.2763892IPR017930Myb domain
SMARTSM007174.3E-164290IPR001005SANT/Myb domain
PfamPF002493.0E-154387IPR001005SANT/Myb domain
CDDcd001678.46E-124588No hitNo description
Gene3DG3DSA:1.10.10.606.3E-205089IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGFCSQSFRF EGGGRNMIRI GLNRTGKSCR LRWVNYLHPG LKRGKMTHQE ERLVLELHAT  60
WGNRWSKIAK KLPGRTDNEI KNYWRTHMRK QAQEKKRPMS PTSSSSNCCS SSMTQDTVGS  120
NGKMNQECDD GNYSMDDIWR EIDQSGANII KPVKDIYYSE QSCHFNFHPL PLASPTWESS  180
LESTWNMDAY ESKMSSFAID QFPLSFEHGR SSWSSLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-18249240108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB59-1 and isoform MYB59-2 are present in roots, leaves, and seedlings, while the expression of isoform MYB59-3 and isoform MYB59-4 is confined to seedlings. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609102.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667400.0KC966740.1 Brassica napus MYB transcription factor 59 (MYB59.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609102.11e-164PREDICTED: transcription factor MYB59-like isoform X2
SwissprotQ4JL841e-113MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A397XKB51e-152A0A397XKB5_BRACM; Uncharacterized protein
STRINGBo9g140750.11e-146(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.21e-123myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]