PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013609023.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 495aa    MW: 54610.2 Da    PI: 6.6943
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013609023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.3e-31236295159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  XP_013609023.1 236 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDTTILTTTYEGNHNHP 295
                     58*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-33221297IPR003657WRKY domain
SuperFamilySSF1182907.98E-28229297IPR003657WRKY domain
PROSITE profilePS5081128.908231297IPR003657WRKY domain
SMARTSM007741.6E-37236296IPR003657WRKY domain
PfamPF031061.6E-26237295IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MEEHSQDGRE IAFLHSGDFL QRDSTSKDHQ PNESSVEHHH KQSIKEVDFF AVKSQPYDLG  60
HMRTTIVGSY GFNDELAPVN SCLRTSSDDD VNDKTKAQIN RLRLELERLH EENHKLKHLL  120
DEISERYNDL QSRVLLARPT QVEGLQQHED IPQAVSSQAL EDRKPMDMSN DIPATTLKRR  180
SPDDVDDRDL HRDSPKAPRL YQNKSANHEE QQNPHDQLPF RKARVSVRAR SDATTVNDGC  240
QWRKYGQKMA KGNPCPRAYY RCTMAVGCPV RKQVQRCAED TTILTTTYEG NHNHPLPPSA  300
TAMAATTSAA AAMLLSGSNT SNFHQTLSTP SAMSSSSSSL YQNFPYTSTI ATLSATAPFP  360
TITLDLTNPP RPLQPPPPPH FMSQYGPGAY LTNANQTRSI NDNYQQLLLP NLSGPQVPPR  420
DMVDTVRAAI ATDPNFTAAL AAAISNIIGG GNNNNNANTN DNNNNNNNKV DAKSGGSSNG  480
DSPPLPQSCT TFSTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21223298175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013609023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300580.0KF430058.1 Brassica rapa WRKY transcription factor 47 (WRKY47) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609023.10.0PREDICTED: probable WRKY transcription factor 47
RefseqXP_013722767.10.0probable WRKY transcription factor 47
SwissprotQ9ZSI70.0WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLA0A0D3DZW60.0A0A0D3DZW6_BRAOL; Uncharacterized protein
STRINGBo9g004230.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.10.0WRKY family protein