PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013609014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 264aa MW: 29596.6 Da PI: 9.6129 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 110.7 | 1.7e-34 | 6 | 132 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 GfrF+Pt+eel+++yLk+k gk+ +ee+i+e++i+++eP+ Lp +k+k+++ wyfFs+ + + + k ++r+t++g+Wk tg ++++++k XP_013609014.1 6 LGFRFSPTQEELINFYLKNKNLGKEWIVEEAISEININSYEPKLLPslSKIKSNDLVWYFFSPYEYT--N-KTRKRTTSNGVWKLTGPERKIKDK 97 6************************888899***************5448888888******98654..3.456778999**************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g ++g+ ktLv+++ + ++g t Wvmhey++ XP_013609014.1 98 ggIGGEIGIVKTLVYHERKPSSGGWTPWVMHEYHI 132 654557***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.987 | 4 | 150 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.32E-40 | 5 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-22 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MNNNRLGFRF SPTQEELINF YLKNKNLGKE WIVEEAISEI NINSYEPKLL PSLSKIKSND 60 LVWYFFSPYE YTNKTRKRTT SNGVWKLTGP ERKIKDKGGI GGEIGIVKTL VYHERKPSSG 120 GWTPWVMHEY HITCLPPDQR TYVLCKILYK GEARDFPSGN NEVGIIPSGT EIGNFSSAGS 180 LVGDFPSAGN YSSDLCYSFV GDSNSVGATS LTKMKKRQQK LPSVQTPVVD SNTVRAANFS 240 KMYRLLQNLP SVEIQGKFNS DTAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-18 | 7 | 150 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-18 | 7 | 150 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-18 | 7 | 150 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-18 | 7 | 150 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-18 | 7 | 150 | 23 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-18 | 7 | 150 | 23 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-18 | 7 | 150 | 23 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-18 | 7 | 150 | 23 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-18 | 7 | 150 | 23 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-18 | 7 | 150 | 23 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-18 | 7 | 150 | 23 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-18 | 7 | 150 | 23 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-18 | 7 | 150 | 20 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-18 | 7 | 150 | 20 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013609014.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013609014.1 | 0.0 | PREDICTED: NAC domain-containing protein 69-like | ||||
Refseq | XP_013713856.1 | 0.0 | NAC domain-containing protein 69-like isoform X1 | ||||
Swissprot | Q9M126 | 5e-73 | NAC69_ARATH; NAC domain-containing protein 69 | ||||
TrEMBL | A0A0D3E6K0 | 0.0 | A0A0D3E6K0_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g061230.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1982 | 19 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01550.1 | 2e-65 | NAC domain containing protein 69 |
Publications ? help Back to Top | |||
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