PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608869.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 326aa    MW: 36745.2 Da    PI: 5.5179
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608869.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.5e-32160214155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r+rWtpeLHe+Fveav++LGG ++A Pk++l++mkv+gLt++hvkSHLQkYR+
  XP_013608869.1 160 KGRMRWTPELHEAFVEAVNHLGGMNNAKPKAVLKHMKVQGLTIYHVKSHLQKYRT 214
                     56****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.134157217IPR017930Myb domain
SuperFamilySSF466891.61E-17159214IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-29159215IPR009057Homeodomain-like
TIGRFAMsTIGR015576.8E-23160214IPR006447Myb domain, plants
PfamPF002491.3E-10162213IPR001005SANT/Myb domain
PfamPF143791.6E-21246290IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
METRNLAHTC SSIPPPDIPI NSQQHNQLIA GPYHHLLSAN GEAVGHIYSN DFPNAASSMV  60
SHEMLDWDDH ADLLDLGVVE EDDELITNEN PIMSPFWNDV FLVASSTSAP KVHESTMQSQ  120
IQQPQVPLQH PSPCVELPPL VRTVSSNSND NTNSTSAAAK GRMRWTPELH EAFVEAVNHL  180
GGMNNAKPKA VLKHMKVQGL TIYHVKSHLQ KYRTARYVSE PSEGSQETKL TPLEHVTSLD  240
TKRGIDINEA LRIQMEVQKQ LHEQLEVQRK MQLRIEEQGK VLLMMFEKQN MDFCKPEQED  300
KASEKTPESC SEEADSPRPK RPRNDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-27159217159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-27159217159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-27159217159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-27159217159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-27159217159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-27159217159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-27159217159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-27159217159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in male gametophyte development. {ECO:0000269|PubMed:22101548}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00111ampDAPTransfer from AT2G20400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608869.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608868.10.0PREDICTED: protein PHR1-LIKE 1-like
RefseqXP_013608869.10.0PREDICTED: protein PHR1-LIKE 1-like
RefseqXP_022564759.10.0myb family transcription factor PHL4 isoform X2
SwissprotQ8GXC21e-112PHL4_ARATH; Myb family transcription factor PHL4
TrEMBLA0A0D3E3M90.0A0A0D3E3M9_BRAOL; Uncharacterized protein
STRINGBo9g028250.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20400.12e-94G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]