PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013608869.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 326aa MW: 36745.2 Da PI: 5.5179 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.5 | 5.5e-32 | 160 | 214 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav++LGG ++A Pk++l++mkv+gLt++hvkSHLQkYR+ XP_013608869.1 160 KGRMRWTPELHEAFVEAVNHLGGMNNAKPKAVLKHMKVQGLTIYHVKSHLQKYRT 214 56****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.134 | 157 | 217 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-17 | 159 | 214 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-29 | 159 | 215 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.8E-23 | 160 | 214 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-10 | 162 | 213 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-21 | 246 | 290 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
METRNLAHTC SSIPPPDIPI NSQQHNQLIA GPYHHLLSAN GEAVGHIYSN DFPNAASSMV 60 SHEMLDWDDH ADLLDLGVVE EDDELITNEN PIMSPFWNDV FLVASSTSAP KVHESTMQSQ 120 IQQPQVPLQH PSPCVELPPL VRTVSSNSND NTNSTSAAAK GRMRWTPELH EAFVEAVNHL 180 GGMNNAKPKA VLKHMKVQGL TIYHVKSHLQ KYRTARYVSE PSEGSQETKL TPLEHVTSLD 240 TKRGIDINEA LRIQMEVQKQ LHEQLEVQRK MQLRIEEQGK VLLMMFEKQN MDFCKPEQED 300 KASEKTPESC SEEADSPRPK RPRNDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-27 | 159 | 217 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in male gametophyte development. {ECO:0000269|PubMed:22101548}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00111 | ampDAP | Transfer from AT2G20400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013608869.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013608868.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Refseq | XP_013608869.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Refseq | XP_022564759.1 | 0.0 | myb family transcription factor PHL4 isoform X2 | ||||
Swissprot | Q8GXC2 | 1e-112 | PHL4_ARATH; Myb family transcription factor PHL4 | ||||
TrEMBL | A0A0D3E3M9 | 0.0 | A0A0D3E3M9_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g028250.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20400.1 | 2e-94 | G2-like family protein |
Publications ? help Back to Top | |||
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