PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608684.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family E2F/DP
Protein Properties Length: 389aa    MW: 43004.3 Da    PI: 6.4432
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608684.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.42.1e-27111193271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  XP_013608684.1 111 TGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfalpnndgtppdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 193
                     689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.2E-1331388IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.2E-46106199IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.2E-35110193IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.4E-25113193IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.4E-21113194IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.81E-41198301IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440749.42E-42200317No hitNo description
SMARTSM011382.0E-63200350IPR014889Transcription factor DP, C-terminal
PfamPF087811.1E-41201319IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MTTTGSNSNH NNRQHDDGSV TNNNNNNNPS NRSWGTVVSA QSVSTSGGSM GSPSSRSEQT  60
TTVATTTSAT DSAFIQLNNL DIQGDDAASQ GPASGVKKKK RGQRATGPDK TGRGLRQFSM  120
KVCEKVESKG RTTYNEVADE LVAEFALPNN DGTPPDQQQY DEKNIRRRVY DALNVLMAMD  180
IISKDKKEIQ WRGLPRTSLS DIEELKAERL SLRNRIEKKT AYAQELEEQY VGLQNLIRRN  240
EHLYSSGNAP SGGVALPFIL VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNFVLKT  300
MKFCEQPPFN NAHNNNSQQT SHNILMLENN NQGPSTDPAP PQPADMYQSH PQLPQNHQLH  360
SQPRVIPTPV TNNDAAQATS PSVSVKPEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-37104198193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.140290.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608684.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937330.0AB493733.1 Arabidopsis thaliana At5g03415 mRNA for hypothetical protein, partial cds, clone: RAAt5g03415.
GenBankAJ2945320.0AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene).
GenBankAK2281480.0AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08.
GenBankAY0860180.0AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608684.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY20.0DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D3EI570.0A0A0D3EI57_BRAOL; Uncharacterized protein
STRINGBo9g181990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.10.0Transcription factor DP