PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608524.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 170aa    MW: 19098.6 Da    PI: 5.9862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-053557123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC++C+k+Fs +  L  H++ H
  XP_013608524.1 35 YKCKYCHKRFSKRQALGGHQNAH 57
                    9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.17E-73363No hitNo description
PfamPF139123.2E-63557IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-53561IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.4043562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MDLNHLIDVD MLSSESSYAS DVSENDSELI EKLKYKCKYC HKRFSKRQAL GGHQNAHKME  60
RTITERQNHA MLTSMNQPYP NMYPYTIDGL TNLTMVNNQS QGTDQSLPIR GNPYQSVMAP  120
PQLYLSPTSP PPPPWCLNLC LAVGNSLQAQ AQPKEPSEDD DLSLSLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608524.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608524.11e-124PREDICTED: zinc finger protein 6-like
TrEMBLA0A3P6DST81e-121A0A3P6DST8_BRAOL; Uncharacterized protein
STRINGBra009088.1-P7e-90(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2370834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.17e-17C2H2 family protein