PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608520.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 191aa    MW: 22027 Da    PI: 4.764
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.81.2e-071260451
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE- CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeyss 51
                    e+  +r +   +R + ++  AeEL + Cd+ ++++ +  ++gkl  ++s
  XP_013608520.1 12 EERKRRATVCQRRMKELIQMAEELTIVCDMSACLVFYNrNNGKLVAWPS 60
                    5566666666777799*******************99736799999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.278152IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-4160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-15294IPR002100Transcription factor, MADS-box
CDDcd002669.71E-16283No hitNo description
PfamPF003191.2E-91258IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGRPKVKLAW VEERKRRATV CQRRMKELIQ MAEELTIVCD MSACLVFYNR NNGKLVAWPS  60
LEEAQSLIDC YNALPETERN MNADEEESSF IKTITKEIEK KLELSRKAVE ELKMDNLMLQ  120
IKNGSRMIAD LSQTEIEKLK SYASKKIAYY DRELRKQHPN TSGNEPFLED DDGEMKTYEG  180
ESSESDGADN A
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608518.11e-140PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_013608519.11e-140PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_013608520.11e-140PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0D3EHE71e-138A0A0D3EHE7_BRAOL; Uncharacterized protein
STRINGBo9g176410.11e-139(Brassica oleracea)
STRINGBo9g176420.11e-139(Brassica oleracea)
STRINGBo9g176440.11e-139(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-33AGAMOUS-like 96