PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013608518.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 191aa MW: 22027 Da PI: 4.764 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.8 | 1.2e-07 | 12 | 60 | 4 | 51 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE- CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeyss 51 e+ +r + +R + ++ AeEL + Cd+ ++++ + ++gkl ++s XP_013608518.1 12 EERKRRATVCQRRMKELIQMAEELTIVCDMSACLVFYNrNNGKLVAWPS 60 5566666666777799*******************99736799999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.278 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.0E-4 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-15 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.71E-16 | 2 | 83 | No hit | No description |
Pfam | PF00319 | 1.2E-9 | 12 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MGRPKVKLAW VEERKRRATV CQRRMKELIQ MAEELTIVCD MSACLVFYNR NNGKLVAWPS 60 LEEAQSLIDC YNALPETERN MNADEEESSF IKTITKEIEK KLELSRKAVE ELKMDNLMLQ 120 IKNGSRMIAD LSQTEIEKLK SYASKKIAYY DRELRKQHPN TSGNEPFLED DDGEMKTYEG 180 ESSESDGADN A |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013608518.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013608518.1 | 1e-140 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_013608519.1 | 1e-140 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_013608520.1 | 1e-140 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0D3EHE7 | 1e-138 | A0A0D3EHE7_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g176410.1 | 1e-139 | (Brassica oleracea) | ||||
STRING | Bo9g176420.1 | 1e-139 | (Brassica oleracea) | ||||
STRING | Bo9g176440.1 | 1e-139 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8774 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 2e-33 | AGAMOUS-like 96 |