PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013608508.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 254aa MW: 29050.2 Da PI: 5.77 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.5 | 5.5e-11 | 11 | 60 | 3 | 51 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyeyss 51 ie+ +r++ kR +g++K AeEL +L d+++++ f + gkl ++s XP_013608508.1 11 IEDRKKRNIACQKRMKGLMKMAEELTILSDTKACLTFFNRDeGKLVAWPS 60 99**********************************99864389999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-9 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.213 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.81E-22 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 7.46E-17 | 3 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-12 | 11 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MARPKLKLAW IEDRKKRNIA CQKRMKGLMK MAEELTILSD TKACLTFFNR DEGKLVAWPS 60 QEEAESLIER FYALPENQRN MNADDQESYI KTITKKIEKK LEHSRKVVEE LEMDHLMLQI 120 QNGRMLADLS QTEVEKLMSY ASKKITVLTR ELGAEHPYTS VDEPFLGDEI IPKATGVAVA 180 PEWGPGPCFR PMRRGGVYLM DKWFVENPEV QKHGDGMTHM GSRFNLNMEP SNDDEEYMKT 240 KDGESSKSGG ADNA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 15 | RPKLKLAWIEDRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013608508.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013608508.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0D3EHB6 | 0.0 | A0A0D3EHB6_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g176110.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8774 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 3e-57 | AGAMOUS-like 96 |