PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013608466.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 391aa MW: 42592.6 Da PI: 10.029

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013608466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.3	3.4e-13	315	368	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+k+ e+ ++ ++ XP_013608466.1 315 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKVNQELQKKQAEMMEMQKN 368 69****************************************998888887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-10	311	369	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.553	313	364	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-10	315	364	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.7E-13	315	364	No hit	No description
CDD	cd14707	5.83E-24	315	367	No hit	No description
Pfam	PF00170	6.9E-11	315	367	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	318	333	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MGTHINFNNL GGEGMKPTDN AYPLARQSSL YSLTFDELQS TLLGGPGKDL GSMNMDELLK 60 SIWTAEEAQA MTMNPSSAAT AVAQPGGGIP LQRQGSLTLP RTISQKTVDE VWKCLFTKDG 120 NMVGSSGGGG GGESNAPLRQ QTLGEITLEE FLLRAGVVRE DNSNNGFYSN NGAPGGLGFG 180 FCQPNQNNIS FNGTNDSMIL KQPPHQQFQQ QPSQPQLQPR QQLNQPPHPP PQQHPHQRLP 240 QTIFPKQANV AFAGAGNNAS NNNNNGLGNF GGGGVTVAAT SPGTSSAENN SLSPVPYVLN 300 RGRRSNTGLE KVIERRQRRM IKNRESAARS RARKQAYTLE LEAEIEKLKK VNQELQKKQA 360 EMMEMQKNEE SSKQPWGSKR QCLRRTLTGP W

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MGTHINFNNL GGEGMKPTDN AYPLARQSSL YSLTFDELQS TLLGGPGKDL GSMNMDELLK  60
SIWTAEEAQA MTMNPSSAAT AVAQPGGGIP LQRQGSLTLP RTISQKTVDE VWKCLFTKDG  120
NMVGSSGGGG GGESNAPLRQ QTLGEITLEE FLLRAGVVRE DNSNNGFYSN NGAPGGLGFG  180
FCQPNQNNIS FNGTNDSMIL KQPPHQQFQQ QPSQPQLQPR QQLNQPPHPP PQQHPHQRLP  240
QTIFPKQANV AFAGAGNNAS NNNNNGLGNF GGGGVTVAAT SPGTSSAENN SLSPVPYVLN  300
RGRRSNTGLE KVIERRQRRM IKNRESAARS RARKQAYTLE LEAEIEKLKK VNQELQKKQA  360
EMMEMQKNEE SSKQPWGSKR QCLRRTLTGP W

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and immatures siliques. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679}.

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013608466.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF974749	0.0	KF974749.1 Brassica napus ABF4-2.1 (ABF4-2.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013608466.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Swissprot	Q9M7Q2	1e-171	AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBL	A0A0D3ACD0	0.0	A0A0D3ACD0_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6G6J2	0.0	A0A3P6G6J2_BRAOL; Uncharacterized protein
STRING	Bo1g114840.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.3	9e-75	ABRE binding factor 4

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance. Plant Mol. Biol., 2018. 98(1-2): p. 137-152 [PMID:30143991]