PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608408.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 684aa    MW: 76305.6 Da    PI: 4.4452
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox421.6e-13581627753
                     --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     +t++ +++L + F++nryp+ ++re LAk+l++t +qV+ WF N R 
  XP_013608408.1 581 HTNSRTQRLFQSFQENRYPDINTRENLAKELQMTVKQVSSWFNNTRF 627
                     689999**************************************996 PP
2PHD39.51.3e-13229284151
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ Cg+   + +++++lCdg C++ fH++C+ ++l++e++p +  +wlC+ C++k
  XP_013608408.1 229 FCAKCGSkdVHVDNDIILCDGfCDRGFHQYCVAPPLRKEDIPPDdeSWLCPGCDCK 284
                     699***965556********88*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.17E-13220284IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.6E-13225283IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.083227284IPR019787Zinc finger, PHD-finger
PfamPF006284.4E-11229284IPR019787Zinc finger, PHD-finger
SMARTSM002495.0E-9229282IPR001965Zinc finger, PHD-type
CDDcd155045.85E-27229281No hitNo description
PROSITE patternPS013590230281IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007112.989572632IPR001356Homeobox domain
SMARTSM003891.2E-9574636IPR001356Homeobox domain
SuperFamilySSF466894.28E-13579632IPR009057Homeodomain-like
PfamPF000464.9E-11581627IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.9E-13581633IPR009057Homeodomain-like
CDDcd000866.62E-11582626No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MDRRRTRSSG SGLDQTNPEV PVQSNASAPL QTPEGKGISS GASSEEHKST PVTGKKSSGS  60
HRELVLGLPC RGQFEFHRSS KKPGVGGERN VVASSHKRAK RSKEAAGSSS VDVNATPVDG  120
SKQRKTYTKK VEVREDDEYT RIKKKLRYFL NRIRYEQSLI DAYSLEGWKG SSAEKLRPEK  180
ELERARKEIL RRKVKIRELF QHVDTLCAEG SIPESLFDSG GEISSEDIFC AKCGSKDVHV  240
DNDIILCDGF CDRGFHQYCV APPLRKEDIP PDDESWLCPG CDCKDYSFDL LNDSLGTKLS  300
VSDSWEKVFP EAAEAMAGGD QTLDCDLPSD DSEDEEYDPD GLNDNADDED GSDDSDESEN  360
EDGSGGESDC TSASDEMIES LKEAKDIMDL PSDDSEDDDY DPDAPIRDED KMQESSNSDN  420
TSDSGDLETF LKRDESNQQD EGKPGRKKSQ LPDVPISESD TGIDDDDDDD DGLVDVPGRR  480
KVERLDYKKL YDDEYENVPT SSSDDEDWDK TARKEDFESG EEGDTVPLKQ HSEAEDHTST  540
KKPRQTPKRE SSKKDTLKAP QEVPRENGFS GEKSSSAVFK HTNSRTQRLF QSFQENRYPD  600
INTRENLAKE LQMTVKQVSS WFNNTRFSTN KRIASKEDVE KLRTGEGETS VAGSSEQTME  660
TKSVVENKIG ASDLTNTGSR KRRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146RIKKKLR
2477484GRRKVERL
3679683RKRRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Primarily detected in root tissue.
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608408.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608408.10.0PREDICTED: homeobox protein HAT3.1-like
SwissprotQ049960.0HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A0D3ACA90.0A0A0D3ACA9_BRAOL; Uncharacterized protein
STRINGBo1g114630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.10.0Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]