PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013608285.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 410aa    MW: 47822.6 Da    PI: 5.3036
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013608285.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.31e-21101554128
             NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.atk...sgyWkatgk 88 
                     G++F+P d+el+++yL +k++gk++++   i+  d+y+ ePw L++ + +  +++ewy+F++r + ++     gk+ +r +t+   sg W+a  k
  XP_013608285.1  10 GIQFQPYDDELINQYLIPKLKGKPCRE---ITMKDVYSKEPWLLDHPMGSffKKNEWYYFVTRTQLSKkkigCGKKVKRkITRdddSGSWRANAK 101
                     99**********************888...9999**********86444444889*****999776553333567777745556679*****998 PP

             NAM  89 dkevlskkgelvglkktLvfy.......kgrapkge.......ktdWvmheyrl 128
                     +    +++++++g+k++L f        k+++++g+       + +W+m ey l
  XP_013608285.1 102 EDITDKETKKTIGVKQSLNFVrsnvnnkKQKREDGTscdvsrdNESWIMTEYML 155
                     55555558899**********7777655333344444444444778******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.3867173IPR003441NAC domain
SuperFamilySSF1019411.44E-229171IPR003441NAC domain
PfamPF023651.9E-1510154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MYEYNDEDGG IQFQPYDDEL INQYLIPKLK GKPCREITMK DVYSKEPWLL DHPMGSFFKK  60
NEWYYFVTRT QLSKKKIGCG KKVKRKITRD DDSGSWRANA KEDITDKETK KTIGVKQSLN  120
FVRSNVNNKK QKREDGTSCD VSRDNESWIM TEYMLPEEKD KFHELVICKI HVIKNSKKEN  180
DDHHEACTSS NHHHYVSVLA SSFSDQQLQH PINEAHRHEA STYHHHPIEF YTLEQQPINI  240
VYQETFLAPI LEQQPINIVD QETFLSPFLE QQPTNIVDQE VFLSPFLAVQ QTNIFDQENF  300
LSPFLREQPT NIACNIQENN KDDHEALIPY HHHEFAADCY TEQQPINEFH GHVPKIPLIG  360
SELINSLATV NVSSLPMEED DGILNYDAQF IYQDLLESVC YPPPPPPRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013608285.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608285.10.0PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A0D3ECL70.0A0A0D3ECL7_BRAOL; Uncharacterized protein
STRINGBo9g135860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.23e-13NAC domain containing protein 35