PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013608283.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 227aa MW: 26441.9 Da PI: 5.4755 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.9 | 2.8e-21 | 10 | 155 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.atk...sgyWkatgk 88 G++F+P d+el++eyL +k+egk+ ++ i+ d+y+ ePw L++ + + +++ewy+ ++r + ++ g++++r +t+ sg Wka k XP_013608283.1 10 GIQFQPYDDELINEYLIPKLEGKPRRE---ITMKDVYSKEPWLLDHPMGSffKKNEWYYLVTRTQLAKknigCGQKAKRkITRdddSGSWKANSK 101 99**********************766...9999**********86444444889****9999876663444477777745556779******99 PP NAM 89 dkevlskkgelvglkktLvfy.......kgrapkge.........ktdWvmheyrl 128 d ++k+ ++g k+tL+f k +++g + +W+m ey l XP_013608283.1 102 DDITDNEKKMVIGEKQTLAFVkskvnnkK--QKSGDgtscnvsrdSESWIMTEYML 155 87777778999**********66555331..2222233444444467899999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.62 | 7 | 173 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.92E-23 | 9 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-15 | 10 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MYEYNDEDGG IQFQPYDDEL INEYLIPKLE GKPRREITMK DVYSKEPWLL DHPMGSFFKK 60 NEWYYLVTRT QLAKKNIGCG QKAKRKITRD DDSGSWKANS KDDITDNEKK MVIGEKQTLA 120 FVKSKVNNKK QKSGDGTSCN VSRDSESWIM TEYMLPEEKD KFHELVICKI HVIKNSKKKD 180 DDHNEALNVS SLPMEEDDGI LNYDAQFIYQ DLLESVCYPP PPPPRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013608283.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013608283.1 | 1e-169 | PREDICTED: NAC domain-containing protein 53-like | ||||
TrEMBL | A0A0D3ECL5 | 1e-134 | A0A0D3ECL5_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g135840.1 | 1e-135 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2607 | 13 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 5e-15 | NAC domain containing protein 35 |