PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013607849.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 221aa MW: 25058.9 Da PI: 6.8491

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013607849.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ +Fs+ L H +H XP_013607849.1 157 YQCKTCDWTFSSFQALGGHRDSH 179 9***********99998888777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.19E-5	153	184	No hit	No description
Pfam	PF13912	1.3E-8	156	181	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.076	157	184	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	159	179	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MEAFEELIAT SKEQSLILKG KRSKRQRPQS PVPFSISPPI VSCPARDVIE EYIYLDSKEN 60 ALGNNVENHK KDGVITSSSP SASWSFNNNP TTLKVEEDEK HLDIASCLIL LFQGHSLPHL 120 KIPNHETNNN NTYKFSCRRF LETSSSNSGG KTDSYVYQCK TCDWTFSSFQ ALGGHRDSHK 180 KHKATSFYSN LEHIFVYDDM YLQTGADPLE EVWGHVTPQK Q

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013607849.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC236784	0.0	AC236784.1 Brassica napus clone JBnB009P12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013607849.1	1e-166	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A0D3E796	1e-165	A0A0D3E796_BRAOL; Uncharacterized protein
STRING	Bo9g069630.1	1e-166	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2231	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-70	C2H2 family protein