PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607623.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 424aa    MW: 49030.2 Da    PI: 8.0084
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607623.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07428126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ykt+lC  + ++G+C+  ++C+FaHg
  XP_013607623.1  4 YKTKLCILYEKNGHCSK-PNCTFAHG 28
                    9****************.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.4E-11234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.51E-6233IPR000571Zinc finger, CCCH-type
SMARTSM003560.002329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.136330IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5428IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MSLYKTKLCI LYEKNGHCSK PNCTFAHGVD DLRLPGESSS FRGRRHNLDG DLRDKLGRHF  60
SPERRPSLER SGRRVQRFNG HENPRSFEKR RDVDYRENRR FDERSDYAGG LKAGSRIEVR  120
EKDERKKFLG YNNVLEEQLK DVELDVKMLT DNKLLLEAAV ERKAREADSL TSKIHELRTQ  180
LDREKEECKR ITLSTKKFVK EYNRFLRAQD DVKRSEARLQ KLGTQLSTYL LGNEGNDREA  240
DIEIVSDEEK NGRNLRSTSE LQNELHNTSS VSRKRHYVEQ QYTTKESVQD ALRGRGEEDK  300
LENGKSPPSR WNRVPSKSFS EEESRVRNEE DAMNKSSSKE DTWKRRRLSS GTSSSNKVMS  360
STSMVARVSD EVAEFDEEKT RAAKGSPLIS LPPPPPFRDA HFHGDEEEEV DVNEQSKADD  420
VDSV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343347KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607623.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607623.10.0PREDICTED: zinc finger CCCH domain-containing protein 40
RefseqXP_013672486.10.0zinc finger CCCH domain-containing protein 40-like
RefseqXP_022550847.10.0zinc finger CCCH domain-containing protein 40-like
SwissprotQ93XW70.0C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLA0A0D3ABP70.0A0A0D3ABP7_BRAOL; Uncharacterized protein
STRINGBo1g105580.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-178C3H family protein