PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013607507.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 269aa MW: 29931.9 Da PI: 4.2327 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00089 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C C+k++s++ +L H++ H XP_013607507.1 70 FICRFCNKRCSSSQSLGGHMNAH 92 89******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.25E-5 | 64 | 112 | No hit | No description |
PROSITE profile | PS50157 | 8.808 | 70 | 97 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MENQVMSSAS SSLAQLEKCN DINVAVEESK ETATENNNPG LGSDSQEVVS ERRSENPSFG 60 SGAVPTGNGF ICRFCNKRCS SSQSLGGHMN AHKRELQWER KRKEMEQMEQ EFHFQWMLSQ 120 YSQGDLSNDN NLGNTSEPFK RICTGLYPSF NSGLMDMNMT VVPRMAPTGF FSGNTFTNGS 180 FSGGLEPMPS YNNYPPMLPR NVPPFPPHRT TNLPSYWYPQ ENVLNEEDVI LKLGNDNIVE 240 IDDDDDADAD AVDQPEEGTS KSWGADLSL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013607507.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607507.1 | 0.0 | PREDICTED: uncharacterized protein LOC106314121 | ||||
TrEMBL | A0A0D3E154 | 0.0 | A0A0D3E154_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g010590.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6363 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27880.1 | 3e-68 | C2H2 family protein |