PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013607506.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 271aa MW: 30649.9 Da PI: 4.5969 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.3e-05 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k+Fs + +L H++ H XP_013607506.1 77 FTCRFCNKRFSASQSLGGHMNAH 99 89******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.56E-7 | 74 | 103 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 74 | 102 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.741 | 77 | 104 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MSSGSSSVAQ PEKCNDINVA VEESREKATE NNNSGLGSDP QEVMSERRSE NPSRGYSAVP 60 TENGIMQRYT SETNKIFTCR FCNKRFSASQ SLGGHMNAHK RELQWERKRK EMEQMEQEFH 120 FQWMLSQYSQ GDLSNDNNLG ITSEPFKRIC TGLYPSFNSG LMDMNMTVVP RMAPTGFFSG 180 NTFTNGFFSG GLEPMHSYNN YPPMLPRNVP PFPPHRTPNL PSYWYPQENV LNEEDVILKL 240 GNDNIVEIDD DDAVDQPEEG TSKSWGADLS L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013607506.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013607506.1 | 0.0 | PREDICTED: uncharacterized protein LOC106314119 | ||||
TrEMBL | A0A0D3E153 | 0.0 | A0A0D3E153_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g010580.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6363 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27880.1 | 5e-70 | C2H2 family protein |