PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607505.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 266aa    MW: 29412.3 Da    PI: 4.2756
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000757092123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C  C+k++s++ +L  H+++H
  XP_013607505.1 70 FICRFCNKRCSSSQSLGGHMNSH 92
                    89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.24E-56997No hitNo description
Gene3DG3DSA:3.30.160.606.7E-47095IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.4947097IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MENQVMSSAS SSLAQLEKCN DINVAVEESK ETATENNNPG LGSDSQEVVT ERRSENPSLG  60
SGAVPTGNGF ICRFCNKRCS SSQSLGGHMN SHTRELQWER KQKEMEQQFH RQWILSQYSQ  120
GALSNDNNLG NTSEPFKRIC TGLYPSFNSG LMDMNMTVVP RMAPTGFFSG NTFTNGSFSG  180
GLEPIPSYNN YPPMLPRNVP PFPPHRTTNL PSYWYPQENV LNEEDVILKL GNDNIVEIDD  240
DDDADADAVD QPEEGTSKSW GADLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607505.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607505.10.0PREDICTED: zinc finger protein STAMENLESS 1-like
TrEMBLA0A078IU160.0A0A078IU16_BRANA; BnaCnng24940D protein
TrEMBLA0A0D3E1520.0A0A0D3E152_BRAOL; Uncharacterized protein
STRINGBo9g010570.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.13e-68C2H2 family protein