PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607456.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 556aa    MW: 62880.6 Da    PI: 4.9226
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM652.2e-2081376128
             NAM   6 rFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkya....tgkrknr.atksgyWkatgkdkev 92 
                      F+Pt+ el++    + v+gk++++   i+++ ++y+  Pw L+  ++v+ +e+ew++F++r+k+       ++r++r + +sg+Wk++g   ++
  XP_013607456.1   8 YFKPTNFELLNILHWRLVRGKRCSF---ITDMqNLYERAPWLLQhvRHVRFRENEWFYFVRRNKRPGkqkaDSTRPSRtVGESGIWKTSGVVAQI 99 
                     6*********998889999999877...777769*********94337777999*******998755222256699996667************* PP

             NAM  93 lskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     ++++g++vg+k+ + f   +++ ++g  t W+mhe+ l
  XP_013607456.1 100 KNQDGANVGTKRHISFKanSATVKDGITTGWTMHEFVL 137
                     *****************4334668999*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.7263153IPR003441NAC domain
PfamPF023653.3E-98137IPR003441NAC domain
SuperFamilySSF1019415.75E-238152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MKGTGRSYFK PTNFELLNIL HWRLVRGKRC SFITDMQNLY ERAPWLLQHV RHVRFRENEW  60
FYFVRRNKRP GKQKADSTRP SRTVGESGIW KTSGVVAQIK NQDGANVGTK RHISFKANSA  120
TVKDGITTGW TMHEFVLDEP WFQEVVLCRI RFCKRKDNAQ YAPRFLPIVI GRERGDSIHH  180
GVAAAGEELQ YLDAPVETHE AQGMEQWTGS CSREVVSYLS RQQIMVQDSN YTILNGGGMM  240
QHQDFGSYGQ HFSVNGSMEK HQDFGSYGQL SGECLGQQQN HILAGQAIYV SHMEDHQQQR  300
HNLFGGHVTG PSHSAQAMEE EEGEEEQQWN GYFGPYSAQP YDQGMMENQD FGSSALGLAQ  360
NHQCLGQKND LSALSELAAQ QQHLGEGSKL SGPSQVPVMM NQALDQEEHH VPWSAQPNDQ  420
YKGQNNDLPT VPMETQQQQH ENVIINSAVQ LHLEAQDNVP LINESMEAQA TDLPVNQGID  480
ASHGGIVGSL TYSELYQEFL GEEEMGSEMD NIWNDFLNEE WVQKLGKNTP EEEAELMADL  540
TNCETFESFL DSLLPN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607456.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896210.0AC189621.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH121P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607456.10.0PREDICTED: uncharacterized protein LOC106314055
TrEMBLA0A3P6E5C70.0A0A3P6E5C7_BRAOL; Uncharacterized protein
STRINGBra036304.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-13NAC family protein