PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013607393.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 385aa    MW: 43356.6 Da    PI: 8.6291
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013607393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.41.3e-40155232178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+++
  XP_013607393.1 155 RCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPNP 232
                     6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-33150217IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.898153230IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-38154234IPR004333Transcription factor, SBP-box
PfamPF031102.8E-31156229IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MECEWENLIS FGTSSAEIPR KLRPMDWETD EFDCSFPTAA YGSSSGLAHA FSKISKSTSI  60
SSSSPEARTL NFTSEELGSS EEFAKGINKS PSLELSFGSG DPVLGLKLGK RTYFEDFWEV  120
ENAARGSALP VSLVSSSASP VKRTKSVPQK VQIPRCQVEG CNLDLSSAKD YHRKHRICEN  180
HSKFPKVVVS GVERRFCQQC SRFHCLSEFD EKKRSCRRRL SDHNARRRKP NPERTYEGKQ  240
QMDFVWNRFA LIHTRSEEKF LWPNPKPIPS RGLIQQSAKT RAELLSKEKV TISSSMGASQ  300
DLDGALSLLS NSTSWVPSDQ PARFSLDHHP TTNLQPMAPR SVTQLSTVSD YWQPDPPAVE  360
GPTDLRRNAV GQFNENYFSL NQFYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-261562291184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211228KKRSCRRRLSDHNARRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013607393.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607390.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_013607391.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_013607393.10.0PREDICTED: squamosa promoter-binding-like protein 2
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLA0A0D3E6730.0A0A0D3E673_BRAOL; Uncharacterized protein
STRINGBo9g058970.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2